Channel:  4D Nucleome

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

467 Articles

Multi-scale deep tensor factorization learns a latent representation of the human epigenome
Schreiber, J., Durham, T. J., Bilmes, J., Noble, W. S.
10.1101/364976 — Posted: 2019-04-11
RNA polymerases as moving barriers to condensin loop extrusion
Brandao, H. B., Wang, X., Paul, P., van den Berg, A., Rudner, D. Z., Mirny, L. A.
10.1101/604280 — Posted: 2019-04-10
Transcription amplification by nuclear speckle association
Kim, J., Khanna, N., Belmont, A. S.
10.1101/604298 — Posted: 2019-04-09
Common DNA sequence variation influences 3-dimensional conformation of the human genome
Gorkin, D., Qiu, Y., Hu, M., Fletez-Brant, K., Liu, T., Schmitt, A., Noor, A., Chiou, J., Gaulton, K., Sebat, J., Li, Y., Hansen, K., Ren, B.
10.1101/592741 — Posted: 2019-03-30
Direct visualization of single nuclear pore complex proteins using genetically-encoded probes for DNA-PAINT
Schlichthaerle, T., Strauss, M. T., Schueder, F., Auer, A., Nijmeijer, B., Kueblbeck, M., Jimenez Sabinina, V., Thevatasan, J. V., Ries, J., Ellenberg, J., Jungmann, R.
10.1101/579961 — Posted: 2019-03-23
Nuclear pores as versatile reference standards for quantitative superresolution microscopy
Thevathasan, J. V., Kahnwald, M., Cieslinski, K., Hoess, P., Peneti, S. K., Reitberger, M., Heid, D., Kasuba, K. C., Hoerner, S. J., Li, Y., Wu, Y.-L., Mund, M., Matti, U., Pereira, P. M., Henriques, R., Nijmeijer-Winter, B., Kueblbeck, M., Jimenez Sabinina, V., Ellenberg, J., Ries, J.
10.1101/582668 — Posted: 2019-03-20
Sci-Hi-C: a single-cell Hi-C method for mapping 3D genome organization in large number of single cells
Ramani, V., Deng, X., Qiu, R., Lee, C., Disteche, C. M., Noble, W. S., Duan, Z., Shendure, J.
10.1101/579573 — Posted: 2019-03-15
CUT&Tag for efficient epigenomic profiling of small samples and single cells
Kaya-Okur, H. S., Wu, S. J., Codomo, C. A., Pledger, E. S., Bryson, T. D., Henikoff, J. G., Ahmad, K., Henikoff, S.
10.1101/568915 — Posted: 2019-03-06
Absolute quantification of cohesin, CTCF and their regulators in human cells
Holzmann, J., Politi, A. Z., Nagasaka, K., Hantsche-Grininger, M., Walther, N., Koch, B., Fuchs, J., Dürnberger, G., Tang, W., Ladurner, R., Stocsits, R. R., Busslinger, G. A., Novak, B., Mechtler, K., Davidson, I. F., Ellenberg, J., Peters, J.-M.
10.1101/560425 — Posted: 2019-02-27
EpiAlignment: alignment with both DNA sequence and epigenomic data
Lu, J., Cao, X., Zhong, S.
10.1101/562199 — Posted: 2019-02-27

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