Channel:  4D Nucleome

474 Articles

Satb1 integrates DNA sequence, shape, motif density and torsional stress to differentially bind targets in nucleosome-dense regions.
GHOSH, R. P., SHI, Q., YANG, L., REDDICK, M. P., NIKITINA, T., ZHURKIN, V. B., FORDYCE, P., STASEVICH, T. J., CHANG, H. Y., GREENLEAF, W. J., LIPHARDT, J. T.
10.1101/450262 — Posted: 2018-10-26
The genome-wide, multi-layered architecture of chromosome pairing in early Drosophila embryos
Erceg, J., AlHaj Abed, J., Goloborodko, A., Lajoie, B. R., Fudenberg, G., Abdennur, N., Imakaev, M., McCole, R. B., Nguyen, S. C., Saylor, W., Joyce, E. F., Senaratne, T. N., Hannan, M. A., Nir, G., Dekker, J., Mirny, L. A., Wu, C.-t.
10.1101/443028 — Posted: 2018-10-17
Highly Structured Homolog Pairing Reflects Functional Organization of the Drosophila Genome
AlHaj Abed, J., Erceg, J., Goloborodko, A., Nguyen, S. C., McCole, R. B., Saylor, W., Fudenberg, G., Lajoie, B. R., Dekker, J., Mirny, L. A., Wu, T.
10.1101/443887 — Posted: 2018-10-17
Antigen receptor locus dynamics is orchestrated near the sol-gel phase transition to enforce stepwise VDJ gene rearrangement
Khanna, N., Zhang, J., Dudko, O., Murre, C.
10.1101/441444 — Posted: 2018-10-12
Condensin II inactivation in interphase does not affect chromatin folding or gene expression
Abdennur, N., Schwarzer, W., Pekowska, A., Shaltiel, I. A., Huber, W., Haering, C. H., Mirny, L., Spitz, F.
10.1101/437459 — Posted: 2018-10-07
Physicochemical mechanotransduction alters nuclear shape and mechanics via heterochromatin formation
Stephens, A. D., Liu, P. Z., Kandula, V., Chen, H., Almassalha, L. M., Backman, V., O'Halloran, T., Adam, S. A., Goldman, R. D., Banigan, E. J., Marko, J. F.
10.1101/423442 — Posted: 2018-09-21
Twist-bend coupling and the statistical mechanics of DNA: perturbation theory and beyond
Nomidis, S. K., Skoruppa, E., Carlon, E., Marko, J. F.
10.1101/422683 — Posted: 2018-09-20
Spatial Chromatin Architecture Alteration by Structural Variations in Human Genomes at Population Scale
Sadowski, M., Kraft, A., Szalaj, P., Wlasnowolski, M., Tang, Z., Ruan, Y., Plewczynski, D.
10.1101/266981 — Posted: 2018-09-14
MAPS: model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments
Juric, I., Yu, M., Abnousi, A., Raviram, R., Fang, R., Zhao, Y., Zhang, Y., Yang, Y., Li, Y., Ren, B., Hu, M.
10.1101/411835 — Posted: 2018-09-08
The accessible chromatin landscape of the hippocampus at single-cell resolution
Sinnamon, J. R., Torkenczy, K. A., Linhoff, M. W., Vitak, S. A., Pliner, H. A., Trapnell, C., Steemers, F. J., Mandel, G., Adey, A. C.
10.1101/407668 — Posted: 2018-09-04

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