Channel:  4D Nucleome

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

315 Articles

Genome-wide variability in recombination activity is associated with meiotic chromatin organization
Jin, X., Fudenberg, G., Pollard, K. S.
10.1101/2021.01.06.425599 — Posted: 2021-01-07
Polymer physics and machine learning reveal a combinatorial code linking chromatin 3D architecture to 1D epigenetics
Esposito, A., Bianco, S., Chiariello, A. M., Abraham, A., Fiorillo, L., Conte, M., Campanile, R., Nicodemi, M.
10.1101/2021.03.01.433416 — Posted: 2021-03-01
Stripenn detects architectural stripes from chromatin conformation data using computer vision
Yoon, S., Vahedi, G.
10.1101/2021.04.16.440239 — Posted: 2021-04-18
Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model
Hammer, M., Huisman, M., Rigano, A., Boehm, U., Chambers, J. J., Gaudreault, N., North, A. J., Pimentel, J. A., Sudar, D., Bajcsy, P., Brown, C. M., Corbett, A. D., Faklaris, O., Lacoste, J., Laude, A., Nelson, G., Nitschke, R., Farzam, F., Smith, C., Grunwald, D., Strambio-De-Castillia, C.
10.1101/2021.04.25.441198 — Posted: 2021-05-31
Integrated spatial genomics in tissues reveals invariant and cell type dependent nuclear architecture
Takei, Y., Zheng, S., Yun, J., Shah, S., Pierson, N., White, J., Schindler, S., Tischbirek, C., Yuan, G.-C., Cai, L.
10.1101/2021.04.26.441547 — Posted: 2021-04-27
Quantification of durable CRISPR-based gene silencing activity
Nakamura, M., Ivec, A., Gao, Y., Qi, L. S.
10.1101/2021.03.31.436355 — Posted: 2021-03-31
Micro-Meta App: an interactive software tool to facilitate the collection of microscopy metadata based on community-driven specifications
Rigano, A., Ehmsen, S., Ozturk, S. U., Ryan, J., Balashov, A., Hammer, M., Kirli, K., Bellve, K., Boehm, U., Brown, C. M., Chambers, J. J., Coleman, R. A., Cosolo, A., Faklaris, O., Fogarty, K., Guilbert, T., Hamacher, A. B., Itano, M. S., Keeley, D. P., Kunis, S., Lacoste, J., Laude, A., Ma, W., Marcello, M., Montero-Llopis, P., Nelson, G., Nitschke, R., Pimentel, J. A., Weidtkamp-Peters, S., Park, P. J., Alver, B., Grunwald, D., Strambio-De-Castillia, C.
10.1101/2021.05.31.446382 — Posted: 2021-06-01
Three-dimensional organization of chromatin associated RNAs and their role in chromatin architecture in human cells
Calandrelli, R., Wen, X., Nguyen, T. C., Chen, C.-J., Qi, Z., Chen, W., Yan, Z., Wu, W., Zaleta-Rivera, K., Hu, R., Yu, M., Wang, Y., Ma, J., Ren, B., Zhong, S.
10.1101/2021.06.10.447969 — Posted: 2021-07-14
Systematic reconstruction of the cellular trajectories of mammalian embryogenesis
Qiu, C., Cao, J., Li, T., Srivatsan, S., Huang, X., Calderon, D., Noble, W. S., Disteche, C. M., Spielmann, M., Moens, C. B., Trapnell, C., Shendure, J.
10.1101/2021.06.08.447626 — Posted: 2021-06-09
Interrogation of the Dynamic Properties of Higher-Order Heterochromatin Using CRISPR/dCas9
Gao, Y., Han, M., Shang, S., Wang, H., Qi, L. S.
10.1101/2021.06.06.447300 — Posted: 2021-06-07

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