Channel:  4D Nucleome

474 Articles

Common DNA sequence variation influences 3-dimensional conformation of the human genome
Gorkin, D., Qiu, Y., Hu, M., Fletez-Brant, K., Liu, T., Schmitt, A., Noor, A., Chiou, J., Gaulton, K., Sebat, J., Li, Y., Hansen, K., Ren, B.
10.1101/592741 — Posted: 2019-03-30
Direct visualization of single nuclear pore complex proteins using genetically-encoded probes for DNA-PAINT
Schlichthaerle, T., Strauss, M. T., Schueder, F., Auer, A., Nijmeijer, B., Kueblbeck, M., Jimenez Sabinina, V., Thevatasan, J. V., Ries, J., Ellenberg, J., Jungmann, R.
10.1101/579961 — Posted: 2019-03-23
Nuclear pores as versatile reference standards for quantitative superresolution microscopy
Thevathasan, J. V., Kahnwald, M., Cieslinski, K., Hoess, P., Peneti, S. K., Reitberger, M., Heid, D., Kasuba, K. C., Hoerner, S. J., Li, Y., Wu, Y.-L., Mund, M., Matti, U., Pereira, P. M., Henriques, R., Nijmeijer-Winter, B., Kueblbeck, M., Jimenez Sabinina, V., Ellenberg, J., Ries, J.
10.1101/582668 — Posted: 2019-03-20
Sci-Hi-C: a single-cell Hi-C method for mapping 3D genome organization in large number of single cells
Ramani, V., Deng, X., Qiu, R., Lee, C., Disteche, C. M., Noble, W. S., Duan, Z., Shendure, J.
10.1101/579573 — Posted: 2019-03-15
CUT&Tag for efficient epigenomic profiling of small samples and single cells
Kaya-Okur, H. S., Wu, S. J., Codomo, C. A., Pledger, E. S., Bryson, T. D., Henikoff, J. G., Ahmad, K., Henikoff, S.
10.1101/568915 — Posted: 2019-03-06
EpiAlignment: alignment with both DNA sequence and epigenomic data
Lu, J., Cao, X., Zhong, S.
10.1101/562199 — Posted: 2019-02-27
Absolute quantification of cohesin, CTCF and their regulators in human cells
Holzmann, J., Politi, A. Z., Nagasaka, K., Hantsche-Grininger, M., Walther, N., Koch, B., Fuchs, J., Dürnberger, G., Tang, W., Ladurner, R., Stocsits, R. R., Busslinger, G. A., Novak, B., Mechtler, K., Davidson, I. F., Ellenberg, J., Peters, J.-M.
10.1101/560425 — Posted: 2019-02-27
Supervised classification enables rapid annotation of cell atlases
Pliner, H. A., Shendure, J., Trapnell, C.
10.1101/538652 — Posted: 2019-02-25
Determining cellular CTCF and cohesin abundances to constrain 3D genome models
Cattoglio, C., Pustova, I., Walther, N., Ho, J. J., Hantsche-Grininger, M., Inouye, C. J., Hossain, M. J., Dailey, G. M., Ellenberg, J., Darzacq, X., Tjian, R., Hansen, A. S.
10.1101/370650 — Posted: 2019-02-24
Cooler: scalable storage for Hi-C data andother genomically-labeled arrays
Abdennur, N., Mirny, L.
10.1101/557660 — Posted: 2019-02-22

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