Channel:  4D Nucleome

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

467 Articles

Supervised classification enables rapid annotation of cell atlases
Pliner, H. A., Shendure, J., Trapnell, C.
10.1101/538652 — Posted: 2019-02-25
Determining cellular CTCF and cohesin abundances to constrain 3D genome models
Cattoglio, C., Pustova, I., Walther, N., Ho, J. J., Hantsche-Grininger, M., Inouye, C. J., Hossain, M. J., Dailey, G. M., Ellenberg, J., Darzacq, X., Tjian, R., Hansen, A. S.
10.1101/370650 — Posted: 2019-02-24
Cooler: scalable storage for Hi-C data andother genomically-labeled arrays
Abdennur, N., Mirny, L.
10.1101/557660 — Posted: 2019-02-22
Localization microscopy at doubled precision with patterned illumination
Cnossen, J., Hinsdale, T., Thorsen, R., Schueder, F., Jungmann, R., Smith, C. S., Rieger, B., Stallinga, S.
10.1101/554337 — Posted: 2019-02-20
Comparing 3D genome organization in multiple species using Phylo-HMRF
Yang, Y., Zhang, Y., Ren, B., Dixon, J., Ma, J.
10.1101/552505 — Posted: 2019-02-19
Chromatin compartment dynamics in a haploinsufficient model of cardiac laminopathy
Bertero, A., Fields, P. A., Smith, A. S., Leonard, A., Beussman, K., Sniadecki, N. J., Kim, D.-H., Tse, H.-F., Pabon, L., Shendure, J., Noble, W. S., Murry, C. E.
10.1101/555250 — Posted: 2019-02-19
Dynamics of gene expression in single root cells of A. thaliana
Jean-Baptiste, K., McFaline-Figueroa, J. L., Alexandre, C. M., Dorrity, M. W., Saunders, L., Bubb, K. L., Trapnell, C., Fields, S., Queitsch, C., Cuperus, J. T.
10.1101/448514 — Posted: 2019-02-11
MOCHI enables discovery of heterogeneous interactome modules in 3D nucleome
Tian, D., Zhang, R., Zhang, Y., Zhu, X., Ma, J.
10.1101/542092 — Posted: 2019-02-07
Using three-dimensional regulatory chromatin interactions from adult and fetal cortex to interpret genetic results for psychiatric disorders and cognitive traits
Giusti-Rodriguez, P. M., Sullivan, P. F.
10.1101/406330 — Posted: 2019-01-30
Completing the ENCODE3 compendium yields accurate imputations across a variety of assays and human biosamples
Schreiber, J., Bilmes, J., Noble, W.
10.1101/533273 — Posted: 2019-01-29

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