Channel:  Human Pangenome Reference Consortium (HPRC)

95 Articles

Evolutionary constraint and innovation across hundreds of placental mammals
Christmas, M. J., Kaplow, I. M., Genereux, D. P., Dong, M. X., Hughes, G. M., Li, X., Sullivan, P. F., Hindle, A. G., Andrews, G., Armstrong, J. C., Bianchi, M., Breit, A. M., Diekhans, M., Fanter, C., Foley, N. M., Goodman, D. B., Goodman, L., Keough, K. C., Kirilenko, B., Kowalczyk, A., Lawless, C., Lind, A. L., Meadows, J. R. S., Moreira, L. R., Redlich, R. W., Ryan, L., Swofford, R., Valenzuela, A., Wagner, F., Wallerman, O., Brown, A. R., Damas, J., Fan, K., Gatesy, J., Grimshaw, J., Johnson, J., Kozyrev, S. V., Lawler, A. J., Marinescu, V. D., Morrill, K. M., Osmanski, A., Paulat, N. S.
10.1101/2023.03.09.531574 — Posted: 2023-03-09
Structurally divergent and recurrently mutated regions of primate genomes
Mao, Y., Harvey, W. T., Porubsky, D., Munson, K. M., Hoekzema, K., Lewis, A. P., Audano, P. A., Rozanski, A., Yang, X., Zhang, S., Gordon, D. S., Wei, X., Logsdon, G. A., Haukness, M., Dishuck, P. C., Jeong, H., del Rosario, R., Bauer, V. L., Fattor, W. T., Wilkerson, G. K., Lu, Q., Paten, B., Feng, G., Sawyer, S. L., Warren, W. C., Carbone, L., Eichler, E. E.
10.1101/2023.03.07.531415 — Posted: 2023-03-07
The motif composition of variable-number tandem repeats impacts gene expression
Lu, T.-Y. T., Smaruj, P. N., Fudenberg, G., Mancuso, N., Chaisson, M.
10.1101/2022.03.17.484784 — Posted: 2023-03-05
Phased nanopore assembly with Shasta and modular graph phasing with GFAse
Lorig-Roach, R., Meredith, M., Monlong, J., Jain, M., Olsen, H., McNulty, B., Porubsky, D., Montague, T. G., Lucas, J., Condon, C., Eizenga, J., Juul, S., McKenzie, S., Simmonds, S., Park, J., Asri, M., Koren, S., Eichler, E., Axel, R., Martin, B., Carnevali, P., Miga, K., Paten, B.
10.1101/2023.02.21.529152 — Posted: 2023-02-22
Recombination between heterologous human acrocentric chromosomes
Guarracino, A., Buonaiuto, S., Gomes de Lima, L., Potapova, T., Rhie, A., Koren, S., Rubinstein, B., Fischer, C., Human Pangenome Reference Consortium, , Gerton, J. L., Phillippy, A. M., Colonna, V., Garrison, E.
10.1101/2022.08.15.504037 — Posted: 2023-01-18
Spatial transcriptomics reveals a conserved segment polarity program that governs muscle patterning in Nematostella vectensis
He, S., Shao, W., Chen, S., Wang, T., Gibson, M.
10.1101/2023.01.09.523347 — Posted: 2023-01-10
A refined characterization of large-scale genomic differences in the first complete human genome
Yang, X., Wang, X., Zou, Y., Zhang, S., Xia, M., Vollger, M. R., Chen, N.-C., Taylor, D. J., Harvey, W. T., Logsdon, G. A., Meng, D., Shi, J., McCoy, R. C., Schatz, M. C., Li, W., Eichler, E. E., Lu, Q., Mao, Y.
10.1101/2022.12.17.520860 — Posted: 2022-12-19
Comparing Genomic and Epigenomic Features across Species Using the WashU Comparative Epigenome Browser
Zhuo, X., Hsu, S., Purushotham, D., Chen, S., Li, D., Wang, T.
10.1101/2022.11.29.518374 — Posted: 2022-12-02
T1K: efficient and accurate KIR and HLA genotyping with next-generation sequencing data
Song, L., Bai, G., Liu, X. S., Li, B., Li, H.
10.1101/2022.10.26.513955 — Posted: 2022-10-27
Inversion polymorphism in a complete human genome assembly
Porubsky, D., Harvey, W. T., Rozanski, A. N., Ebler, J., Hoeps, W., Ashraf, H., Hasenfeld, P., Paten, B., Sanders, A. D., Marschall, T., Korbel, J. O., Eichler, E. E.
10.1101/2022.10.06.511148 — Posted: 2022-10-06

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