Channel:  Human Pangenome Reference Consortium (HPRC)

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

50 Articles

Automated assembly of high-quality diploid human reference genomes
Jarvis, E. D., Formenti, G., Rhie, A., Guarracino, A., Yang, C., Wood, J., Tracey, A., Thibaud-Nissen, F., Vollger, M. R., Porubsky, D., Cheng, H., Asri, M., Logsdon, G. A., Carnevali, P., Chaisson, M., Chin, C.-S., Cody, S., Collins, J., Ebert, P., Escalona, M., Fedrigo, O., Fulton, R. S., Fulton, L. L., Garg, S., Ghurye, J., Granat, A., Green, E., Hall, I. M., Harvey, W. H., Hasenfeld, P., Hastie, A., Haukness, M., Jaeger, E. B., Jain, M., Kirsche, M., Kolmogorov, M., Korbel, J. O., Koren, S., Korlach, J., Lee, J., Li, D., Lindsay, T., Lucas, J., Luo, F., Marschall, T., McDaniel, J., Nie, F.
10.1101/2022.03.06.483034 — Posted: 2022-03-10
Evolution of transposable element-derived enhancer activity
Du, A. Y., Zhuo, X., Sundaram, V., Jensen, N. O., Chaudhari, H. G., Saccone, N. L., Cohen, B. A., Wang, T.
10.1101/2022.03.16.483999 — Posted: 2022-03-17
Concerted modification of nucleotides at functional centers of the ribosome revealed by single-molecule RNA modification profiling
Bailey, A. D., Talkish, J., Ding, H., Igel, H., Duran, A., Mantripragada, S., Paten, B., Ares, M.
10.1101/2021.12.16.472988 — Posted: 2022-03-25
AGC: Compact representation of assembled genomes
Deorowicz, S., Danek, A., Li, H.
10.1101/2022.04.07.487441 — Posted: 2022-04-07
Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspring data
Serra Mari, R., Schrinner, S., Finkers, R., Arens, P., Schmidt, M. H.- W., Usadel, B., Klau, G. W., Marschall, T.
10.1101/2022.05.10.491293 — Posted: 2022-05-10
The dynseq genome browser track enables visualization of context-specific, dynamic DNA sequence features at single nucleotide resolution
Nair, S., Barrett, A., Li, D., Raney, B. J., Lee, B. T., Kerpedjiev, P., Ramalingam, V., Pampari, A., Lekschas, F., Wang, T., Haeussler, M., Kundaje, A.
10.1101/2022.05.26.493621 — Posted: 2022-05-31
Gaps and complex structurally variant loci in phased genome assemblies
Porubsky, D., Vollger, M. R., Harvey, W. T., Rozanski, A. N., Ebert, P., Hickey, G., Hasenfeld, P., Sanders, A. D., Stober, C., Human Pangenome Reference Consortium (HPRC), , Korbel, J. O., Paten, B., Marschall, T., Eichler, E. E.
10.1101/2022.07.06.498874 — Posted: 2022-07-06
Increased mutation rate and interlocus gene conversion within human segmental duplications.
Vollger, M. R., DeWitt, W. S., Dishuck, P. C., Harvey, W. T., Guitart, X., Goldberg, M. E., Rozanski, A., Lucas, J., Asri, M., The Human Pangenome Reference Consortium, , Munson, K. M., Lewis, A. P., Hoekzema, K., Logsdon, G. A., Porubsky, D., Paten, B., Harris, K., Hsieh, P., Eichler, E. E.
10.1101/2022.07.06.498021 — Posted: 2022-07-07
A Draft Human Pangenome Reference
Liao, W.-W., Asri, M., Ebler, J., Doerr, D., Haukness, M., Hickey, G., Lu, S., Lucas, J. K., Monlong, J., Abel, H. J., Buonaiuto, S., Chang, X. H., Cheng, H., Chu, J., Colonna, V., Eizenga, J. M., Feng, X., Fischer, C., Fulton, R. S., Garg, S., Groza, C., Guarracino, A., Harvey, W. T., Heumos, S., Howe, K., Jain, M., Lu, T.-Y., Markello, C., Martin, F. J., Mitchell, M. W., Munson, K. M., Mwaniki, M. N., Novak, A. M., Olsen, H. E., Pesout, T., Porubsky, D., Prins, P., Sibbesen, J. A., Tomlinson, C., Villani, F., Vollger, M. R., Human Pangenome Reference Consortium, , Bourque, G., Chaisson, M.
10.1101/2022.07.09.499321 — Posted: 2022-07-09
Haplotype-aware pantranscriptome analyses using spliced pangenome graphs
Sibbesen, J. A., Eizenga, J. M., Novak, A. M., Siren, J., Chang, X., Garrison, E., Paten, B.
10.1101/2021.03.26.437240 — Posted: 2022-07-21

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