Channel:  Human Pangenome Reference Consortium (HPRC)

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

50 Articles

Haplotype-aware pantranscriptome analyses using spliced pangenome graphs
Sibbesen, J. A., Eizenga, J. M., Novak, A. M., Siren, J., Chang, X., Garrison, E., Paten, B.
10.1101/2021.03.26.437240 — Posted: 2022-07-21
A Draft Human Pangenome Reference
Liao, W.-W., Asri, M., Ebler, J., Doerr, D., Haukness, M., Hickey, G., Lu, S., Lucas, J. K., Monlong, J., Abel, H. J., Buonaiuto, S., Chang, X. H., Cheng, H., Chu, J., Colonna, V., Eizenga, J. M., Feng, X., Fischer, C., Fulton, R. S., Garg, S., Groza, C., Guarracino, A., Harvey, W. T., Heumos, S., Howe, K., Jain, M., Lu, T.-Y., Markello, C., Martin, F. J., Mitchell, M. W., Munson, K. M., Mwaniki, M. N., Novak, A. M., Olsen, H. E., Pesout, T., Porubsky, D., Prins, P., Sibbesen, J. A., Tomlinson, C., Villani, F., Vollger, M. R., Human Pangenome Reference Consortium, , Bourque, G., Chaisson, M.
10.1101/2022.07.09.499321 — Posted: 2022-07-09
Increased mutation rate and interlocus gene conversion within human segmental duplications.
Vollger, M. R., DeWitt, W. S., Dishuck, P. C., Harvey, W. T., Guitart, X., Goldberg, M. E., Rozanski, A., Lucas, J., Asri, M., The Human Pangenome Reference Consortium, , Munson, K. M., Lewis, A. P., Hoekzema, K., Logsdon, G. A., Porubsky, D., Paten, B., Harris, K., Hsieh, P., Eichler, E. E.
10.1101/2022.07.06.498021 — Posted: 2022-07-07
Gaps and complex structurally variant loci in phased genome assemblies
Porubsky, D., Vollger, M. R., Harvey, W. T., Rozanski, A. N., Ebert, P., Hickey, G., Hasenfeld, P., Sanders, A. D., Stober, C., Human Pangenome Reference Consortium (HPRC), , Korbel, J. O., Paten, B., Marschall, T., Eichler, E. E.
10.1101/2022.07.06.498874 — Posted: 2022-07-06
The dynseq genome browser track enables visualization of context-specific, dynamic DNA sequence features at single nucleotide resolution
Nair, S., Barrett, A., Li, D., Raney, B. J., Lee, B. T., Kerpedjiev, P., Ramalingam, V., Pampari, A., Lekschas, F., Wang, T., Haeussler, M., Kundaje, A.
10.1101/2022.05.26.493621 — Posted: 2022-05-31
Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspring data
Serra Mari, R., Schrinner, S., Finkers, R., Arens, P., Schmidt, M. H.- W., Usadel, B., Klau, G. W., Marschall, T.
10.1101/2022.05.10.491293 — Posted: 2022-05-10
AGC: Compact representation of assembled genomes
Deorowicz, S., Danek, A., Li, H.
10.1101/2022.04.07.487441 — Posted: 2022-04-07
Concerted modification of nucleotides at functional centers of the ribosome revealed by single-molecule RNA modification profiling
Bailey, A. D., Talkish, J., Ding, H., Igel, H., Duran, A., Mantripragada, S., Paten, B., Ares, M.
10.1101/2021.12.16.472988 — Posted: 2022-03-25
Evolution of transposable element-derived enhancer activity
Du, A. Y., Zhuo, X., Sundaram, V., Jensen, N. O., Chaudhari, H. G., Saccone, N. L., Cohen, B. A., Wang, T.
10.1101/2022.03.16.483999 — Posted: 2022-03-17
Automated assembly of high-quality diploid human reference genomes
Jarvis, E. D., Formenti, G., Rhie, A., Guarracino, A., Yang, C., Wood, J., Tracey, A., Thibaud-Nissen, F., Vollger, M. R., Porubsky, D., Cheng, H., Asri, M., Logsdon, G. A., Carnevali, P., Chaisson, M., Chin, C.-S., Cody, S., Collins, J., Ebert, P., Escalona, M., Fedrigo, O., Fulton, R. S., Fulton, L. L., Garg, S., Ghurye, J., Granat, A., Green, E., Hall, I. M., Harvey, W. H., Hasenfeld, P., Hastie, A., Haukness, M., Jaeger, E. B., Jain, M., Kirsche, M., Kolmogorov, M., Korbel, J. O., Koren, S., Korlach, J., Lee, J., Li, D., Lindsay, T., Lucas, J., Luo, F., Marschall, T., McDaniel, J., Nie, F.
10.1101/2022.03.06.483034 — Posted: 2022-03-10

RSS  Channel RSS