COVID-19 SARS-CoV-2 preprints from medRxiv and bioRxiv

31,627 Articles (22,913 medRxiv, 8,714 bioRxiv)

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phastSim: efficient simulation of sequence evolution for pandemic-scale datasets
De Maio, N., Weilguny, L., Walker, C. R., Turakhia, Y., Corbett-Detig, R., Goldman, N.
10.1101/2021.03.15.435416 — Posted: 2021-03-16
Immunoinformatic Approach for the identification of T Cell and B Cell Epitopes in the Surface Glycoprotein and Designing a Potent Multiepitope Vaccine Construct Against SARS-CoV-2 including the new UK variant
Krishnasamy, K., Selvaraj, G. F., Ramesh, K., Padmanabhan, P., Gopalan, V., Govindan, K., Chandran, A., Sivasubramanian, S.
10.1101/2021.03.15.435391 — Posted: 2021-03-16
3D genomic capture of regulatory immuno-genetic profiles in COVID-19 patients for prognosis of severe COVID disease outcome
Hunter, E., Koutsothanasi, C., Wilson, A., Santos, F. C., Salter, M., Powell, R., Dring, A., Brajer, P., Egan, B., Westra, J., Ramadass, A., Messner, W., Brunton, A., Lyski, Z., Vancheeswaran, R., Barlow, A., Pchejetski, D., Robbins, P., Mellor, J., Akoulitchev, A.
10.1101/2021.03.14.435295 — Posted: 2021-03-16
DNA spike-ins enable confident interpretation of SARS-CoV-2 genomic data from amplicon-based sequencing
Lagerborg, K. A., Normandin, E., Bauer, M. R., Adams, G., Figueroa, K., Loreth, C., Gladden-Young, A., Shaw, B., Pearlman, L., Shenoy, E. S., Hooper, D., Pierce, V. M., Zachary, K. C., Park, D. J., MacInnis, B. L., Lemieux, J. E., Sabeti, P. C., Reilly, S. K., Siddle, K. J.
10.1101/2021.03.16.435654 — Posted: 2021-03-16
Design and proof-of-concept for targeted phage-based COVID-19 vaccination strategies with a streamlined cold-free supply chain
Staquicini, D. I., Tang, F. H. F., Markosian, C., Yao, V. J., Staquicini, F. I., Dodero Rojas, E., Contessoto, V. G., Davis, D., O'Brien, P., Habib, N., Smith, T. L., Bruiners, N., Sidman, R. L., Gennaro, M. L., Lattime, E. C., Libutti, S. K., Whitford, P. C., Burley, S. K., Onuchic, J. N., Arap, W., Pasqualini, R.
10.1101/2021.03.15.435496 — Posted: 2021-03-16
Cluster Analysis of SARS-CoV-2 Gene using Deep Learning Autoencoder: Gene Profiling for Mutations and Transitions
Miyake, J., Sato, T., Baba, S., Nakamura, H., Niioka, H., Nakazawa, Y.
10.1101/2021.03.16.435601 — Posted: 2021-03-16
Elicitation of broadly protective sarbecovirus immunity by receptor-binding domain nanoparticle vaccines
Walls, A. C., Miranda, M. C., Pham, M. N., Schaefer, A., Greaney, A., Arunachalam, P. S., Navarro, M.-J., Tortorici, M. A., Rogers, K., O'Connor, M. A., Shireff, L., Ferrell, D. E., Brunette, N., Kepl, E., Bowen, J. E., Zepeda, S. K., Starr, T., Hsieh, C.-L., Fiala, B., Wrenn, S., Pettie, D., Sydeman, C., Johnson, M., Blackstone, A., Ravichandran, R., Ogohara, C., Carter, L., Tilles, S. W., Rappuoli, R., O'Hagan, D. T., Van Der Most, R., Van Voorhis, W. C., McLellan, J. S., Kleanthous, H., Sheahan, T. P., Fuller, D. H., Villinger, F., Bloom, J., Pulendran, B., Baric, R., King, N. P., Veesler, D.
10.1101/2021.03.15.435528 — Posted: 2021-03-16
Understanding SARS-CoV-2 Infection and Dynamics with Long Term Wastewater based Epidemiological Surveillance
Tharak, A., Kopperi, H., Hemalatha, M., Kiran, U., Gokulan, C. G., Moharir, S., Mishra, R. K., Venkata Mohan, S.
10.1101/2021.03.15.21253574 — Posted: 2021-03-16
Shed the light on virus: virucidal effects of 405 nm visible light on SARS-CoV-2 and influenza A virus.
Yahnke, C. J., Rathnasinghe, R. J., Garcia-Sastre, A.
10.1101/2021.03.14.435337 — Posted: 2021-03-15
Antibody evasion by the Brazilian P.1 strain of SARS-CoV-2
Dejnirattisai, W., Zhou, D., Supasa, P., Liu, C., Mentzer, A. J., Ginn, H., Zhao, Y., Duyvesteyn, H. M. E., Tuekprakhon, A., Nutalai, R., Wang, B., Paesen, G. C., Lopez-Camacho, C., Slon-Campos, J., Walter, T., Skelly, D., Clemens, S. A. C., Naveca, F. G., Nascimento, V., Nascimento, F., da Costa, C. F., Dold, C., Levin, R., Dong, T., Pollard, A. J., Knight, J. C., Crook, D., Lambe, T., Clutterbuck, E., Bibi, S., Flaxman, A., Bittaye, M., Belij-Rammerstorfer, S., Gilbert, S., Carroll, M. W., Klenerman, P., Barnes, E., Dunachie, S. J., Paterson, N. G., Williams, M. A., Hall, D. R., Hulswit, R., Bowden, T. A., Fry, E. E., Mongkolsapaya, J., Ren, J., Stuart, D. I., Screaton, G. R.
10.1101/2021.03.12.435194 — Posted: 2021-03-15

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