Channel:  Human Cell Atlas

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

184 Articles

Inference of single cell profiles from histology stains with the Single-Cell omics from Histology Analysis Framework (SCHAF)
Comiter, C., Vaishnav, E. D., Ciapmricotti, M., Li, B., Yang, Y., Rodig, S. J., Turner, M., Pfaff, K. L., Jane-Valbuena, J., Slyper, M., Waldman, J., Vigneau, S., Wu, J., Blosser, T. R., Segerstolpe, A., Abravanel, D., Wagle, N., Zhuang, X., Rudin, C. M., Klughammer, J., Rozenblatt-Rosen, O., Kobayash-Kirschvink, K. J., Shu, J., Regev, A.
10.1101/2023.03.21.533680 — Posted: 2023-03-23
A human embryonic limb cell atlas resolved in space and time
Zhang, B., He, P., Lawrence, J. E., Wang, S., Tuck, E., Williams, B. A., Roberts, K., Kleshchevnikov, V., Mamanova, L., Bolt, L., Polanski, K., Elmentaite, R., Fasouli, E. S., Prete, M., He, X., Yayon, N., Fu, Y., Yang, H., Liang, C., Zhang, H., Blain, R., Chedotal, A., Fitzpatrick, D., Firth, H., Dean, A., Marioni, J. C., Barker, R. A., Storer, M. A., Wold, B., Zhang, H., Teichmann, S.
10.1101/2022.04.27.489800 — Posted: 2023-03-19
Airway epithelial response to RSV is impaired in multiciliated and goblet cells in asthma
Gay, A. C. A., Banchero, M., Carpaij, O. A., Kole, T., Apperloo, L., van Gosliga, D., Fajar, P. A., Koppelman, G. H., Bont, L., Hendriks, R. W., van den Berge, M., Nawijn, M. C.
10.1101/2023.03.16.532356 — Posted: 2023-03-17
Spatially resolved multiomics of human cardiac niches
Kanemaru, K., Cranley, J., Muraro, D., Miranda, A. M. A., Pett, J. P., Litvinukova, M., Kumasaka, N., Ho, S. Y., Polanski, K., Richardson, L., Mach, L., Dabrowska, M., Richoz, N., Barnett, S. N., Perera, S., Wilbrey-Clark, A. L., Talavera-Lopez, C., Mulas, I., Mahbubani, K. T., Bolt, L., Mamanova, L., Tuck, L., Wang, L., Huang, M. M., Prete, M., Pritchard, S., Dark, J., Saeb-Parsy, K., Patel, M., Clatworthy, M. R., Hübner, N., Chowdhury, R. A., Noseda, M., Teichmann, S. A.
10.1101/2023.01.30.526202 — Posted: 2023-02-03
Dandelion utilizes single cell adaptive immune receptor repertoire to explore lymphocyte developmental origins
Suo, C., Polanski, K., Dann, E., Lindeboom, R. G. H., Vilarrasa Blasi, R., Vento-Tormo, R., Haniffa, M., Meyer, K. B., Dratva, L. M., Tuong, Z. K., Clatworthy, M. R., Teichmann, S.
10.1101/2022.11.18.517068 — Posted: 2023-01-27
The emergence of goblet inflammatory or ITGB6hi nasal progenitor cells determines age-associated SARS-CoV-2 pathogenesis
Woodall, M., Cujba, A.-M., Worlock, K. B., Case, K.-M., Masonou, T., Yoshida, M., Polanski, K., Huang, N., Lindeboom, R. G., Mamanova, L., Bolt, L., Richardson, L., Ellis, S., Palor, M., Burgoyne, T., Pinto, A., Moulding, D. A., McHugh, T. D., Saleh, A., Kilich, E., Mehta, P., O'Callaghan, C., Zhou, J., Barclay, W., De Coppi, P., Butler, C. R., Vinette, H., Roy, S., Breuer, J., Chambers, R. C., Heywood, W. E., Mills, K., Hynds, R. E., Teichmann, S. A., Meyer, K. B., Nikolic, M. Z., Smith, C. M.
10.1101/2023.01.16.524211 — Posted: 2023-01-18
Early infection response of the first trimester human placenta at single-cell scale
Hoo, R., Ruiz-Morales, E. R., Kelava, I., Sancho-Serra, C., Icoresi Mazzeo, C., Chelaghma, S., Tuck, E., Predeus, A. V., Fernandez-Antoran, D., Waller, R. F., Lee, M., Vento-Tormo, R.
10.1101/2023.01.02.522155 — Posted: 2023-01-02
Single nucleus and spatial transcriptomic profiling of human healthy hamstring tendon
Mimpen, J. Y., Ramos-Mucci, L. D., Paul, C., Kurjan, A., Hulley, P., Ikwuanusi, C., Gwilym, S., Baldwin, M. J., Cribbs, A. P., Snelling, S. J. B.
10.1101/2022.12.19.521110 — Posted: 2022-12-20
Early human lung immune cell development and its role in epithelial cell fate
Barnes, J. L., He, P., Yoshida, M., Worlock, K. B., Lindeboom, R. G. H., Suo, C., Pett, J. P., Wilbrey-Clark, A., Dann, E., Mamanova, L., Richardson, L., Oliver, A. J., Pennycuick, A. L., Allen-Hyttinen, J., Herczeg, I. T., Hynds, R. E., Teixeira, V. H., Haniffa, M., Lim, K., Sun, D., Rawlins, E. L., Polanski, K., Lyons, P. A., Marioni, J. C., Tuong, Z. K., Clatworthy, M. R., Reading, J. L., Janes, S. M., Teichmann, S., Meyer, K. B., Nikolic, M. Z.
10.1101/2022.12.13.519713 — Posted: 2022-12-15
Monopogen: single nucleotide variant calling from single cell sequencing
Dou, J., Tan, Y., Kock, k. H., Wang, J., Cheng, X., Tan, L. M., Han, K. Y., Hon, C.-C., Park, W. Y., Shin, J. W., Chen, H., Prabhakar, S., Navin, N., Chen, R., Chen, K.
10.1101/2022.12.04.519058 — Posted: 2022-12-07

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