Channel:  Human Cell Atlas

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

182 Articles

Dandelion utilizes single cell adaptive immune receptor repertoire to explore lymphocyte developmental origins
Suo, C., Polanski, K., Dann, E., Lindeboom, R. G. H., Vilarrasa Blasi, R., Vento-Tormo, R., Haniffa, M., Meyer, K. B., Dratva, L. M., Tuong, Z. K., Clatworthy, M. R., Teichmann, S.
10.1101/2022.11.18.517068 — Posted: 2023-01-27
The emergence of goblet inflammatory or ITGB6hi nasal progenitor cells determines age-associated SARS-CoV-2 pathogenesis
Woodall, M., Cujba, A.-M., Worlock, K. B., Case, K.-M., Masonou, T., Yoshida, M., Polanski, K., Huang, N., Lindeboom, R. G., Mamanova, L., Bolt, L., Richardson, L., Ellis, S., Palor, M., Burgoyne, T., Pinto, A., Moulding, D. A., McHugh, T. D., Saleh, A., Kilich, E., Mehta, P., O'Callaghan, C., Zhou, J., Barclay, W., De Coppi, P., Butler, C. R., Vinette, H., Roy, S., Breuer, J., Chambers, R. C., Heywood, W. E., Mills, K., Hynds, R. E., Teichmann, S. A., Meyer, K. B., Nikolic, M. Z., Smith, C. M.
10.1101/2023.01.16.524211 — Posted: 2023-01-18
Early infection response of the first trimester human placenta at single-cell scale
Hoo, R., Ruiz-Morales, E. R., Kelava, I., Sancho-Serra, C., Icoresi Mazzeo, C., Chelaghma, S., Tuck, E., Predeus, A. V., Fernandez-Antoran, D., Waller, R. F., Lee, M., Vento-Tormo, R.
10.1101/2023.01.02.522155 — Posted: 2023-01-02
Single nucleus and spatial transcriptomic profiling of human healthy hamstring tendon
Mimpen, J. Y., Ramos-Mucci, L. D., Paul, C., Kurjan, A., Hulley, P., Ikwuanusi, C., Gwilym, S., Baldwin, M. J., Cribbs, A. P., Snelling, S. J. B.
10.1101/2022.12.19.521110 — Posted: 2022-12-20
Early human lung immune cell development and its role in epithelial cell fate
Barnes, J. L., He, P., Yoshida, M., Worlock, K. B., Lindeboom, R. G. H., Suo, C., Pett, J. P., Wilbrey-Clark, A., Dann, E., Mamanova, L., Richardson, L., Oliver, A. J., Pennycuick, A. L., Allen-Hyttinen, J., Herczeg, I. T., Hynds, R. E., Teixeira, V. H., Haniffa, M., Lim, K., Sun, D., Rawlins, E. L., Polanski, K., Lyons, P. A., Marioni, J. C., Tuong, Z. K., Clatworthy, M. R., Reading, J. L., Janes, S. M., Teichmann, S., Meyer, K. B., Nikolic, M. Z.
10.1101/2022.12.13.519713 — Posted: 2022-12-15
Monopogen: single nucleotide variant calling from single cell sequencing
Dou, J., Tan, Y., Kock, k. H., Wang, J., Cheng, X., Tan, L. M., Han, K. Y., Hon, C.-C., Park, W. Y., Shin, J. W., Chen, H., Prabhakar, S., Navin, N., Chen, R., Chen, K.
10.1101/2022.12.04.519058 — Posted: 2022-12-07
Epigenomic complexity of the human brain revealed by single-cell DNA methylomes and 3D genome structures
Tian, W., Zhou, J., Bartlett, A., Zeng, Q., Liu, H., Castanon, R. G., Kenworthy, M., Altshul, J., Valadon, C., Aldridge, A., Nery, J. R., Chen, H., Xu, J., Johnson, N. D., Lucero, J., Osteen, J. K., Emerson, N., Rink, J., Lee, J., Li, Y., Siletti, K., Liem, M., Claffey, N., OConnor, C., Yanny, A. M., Nyhus, J., Dee, N., Casper, T., Shapovalova, N., Hirschstein, D., Hodge, R., Levi, B. P., Keene, C. D., Linnarsson, S., Lein, E., Ren, B., Behrens, M. M., Ecker, J. R.
10.1101/2022.11.30.518285 — Posted: 2022-12-01
Singletrome: A method to analyze and enhance the transcriptome with long noncoding RNAs for single cell analysis
RAHMAN, R. U., Ahmad, I., Sparks, R., Saad, A. B., Mullen, A.
10.1101/2022.10.31.514182 — Posted: 2022-11-24
A comparative atlas of single-cell chromatin accessibility in the human brain
Li, Y. E., Preissl, S., Miller, M., Johnson, N. D., Wang, Z., Jiao, H., Zhu, C., Wang, Z., Xie, Y., Poirin, O., Kern, C., Pinto-Duarte, A., Tian, W., Siletti, K., Emerson, N., Osteen, J., Lucero, J., Lin, L., Yang, Q., Espinoza, S., Zhu, Q., Zemke, N., Yanny, A. M., Nyhus, J., Dee, N., Casper, T., Shapovalova, N., Hirschstein, D., Hodge, R. D., Linnarsson, S., Bakken, T. E., Levi, B., Keene, C. D., Shang, J., Lein, E. S., Wang, A., Behrens, M. M., Ecker, J. R., Ren, B.
10.1101/2022.11.09.515833 — Posted: 2022-11-10
Signature morpho-electric properties of diverse GABAergic interneurons in the human neocortex
Lee, B., Dalley, R., Miller, J. A., Chartrand, T., Close, J., Mann, R., Mukora, A., Ng, L., Alfiler, L., Baker, K., Bertagnolli, D., Brouner, K., Casper, T., Csajbok, E., Dee, N., Donadio, N., Driessens, S. L. W., Egdorf, T., Enstrom, R., Galakhova, A. A., Gary, A., Gelfand, E., Goldy, J., Hadley, K., Heistek, T. S., Hill, D., Johansen, N., Jorstad, N., Kim, L., Kocsis, A. K., Kruse, L., Kunst, M., Leon, G., Long, B., Mallory, M., Maxwell, M., McGraw, M., McMillen, D., Melief, E. J., Molnar, G., Mortrud, M. T., Newman, D., Nyhus, J., Opitz-Araya, X., Pham, T., Pom, A., Potekhina, L., Rajanbabu
10.1101/2022.11.08.515739 — Posted: 2022-11-09

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