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Channel : Human Cell Atlas

49 Articles

Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and highlights inflammatory programs in putative target cells
Muus, C., Luecken, M. D., Eraslan, G., Waghray, A., Heimberg, G., Sikkema, L., Kobayashi, Y., Vaishnav, E. D., Subramanian, A., Smillie, C., Jagadeesh, K., Duong, E. T., Fiskin, E., Torlai Triglia, E., Becavin, C., Ansari, M., Cai, P., Lin, B., Buchanan, J., Chen, S., Shu, J., Haber, A. L., Chung, H., Montoro, D. T., Adams, T., Aliee, H., Allon, S. J., Andrusivova, Z., Angelidis, I., Ashenberg, O., Bassler, K., Becavin, C., Benhar, I., Bergenstrahle, J., Bergenstrahle, L., Bolt, L., Braun, E., Bui, L. T., Chaffin, M., Chichelnitskiy, E., Chiou, J., Conlon, T. M., Cuoco, M. S., Deprez, M., Fisc
10.1101/2020.04.19.049254 — Posted: 2020-04-21
The Human Cell Atlas
Regev, A., Teichmann, S., Lander, E. S., Amit, I., Benoist, C., Birney, E., Bodenmiller, B., Campbell, P., Carninci, P., Clatworthy, M., Clevers, H., Deplancke, B., Dunham, I., Eberwine, J., Eils, R., Enard, W., Farmer, A., Fugger, L., Gottgens, B., Hacohen, N., Haniffa, M., Hemberg, M., Kim, S. K., Klenerman, P., Kriegstein, A., Lein, E., Linnarsson, S., Lundeberg, J., Majumder, P., Marioni, J., Merad, M., Mhlanga, M., Nawijn, M., Netea, M., Nolan, G., Pe'er, D., Philipakis, A., Ponting, C. P., Quake, S. R., Reik, W., Rozenblatt-Rosen, O., Sanes, J. R., Satija, R., Shumacher, T., Shalek, A. K
10.1101/121202 — Posted: 2017-05-08
scConsensus: combining supervised and unsupervised clustering for cell type identification in single-cell RNA sequencing data
Ranjan, B., Schmidt, F., Sun, W., Park, J., Honardoost, M. A., Tan, J., Arul Rayan, N., Prabhakar, S.
10.1101/2020.04.22.056473 — Posted: 2020-04-24
Spatial and single-cell transcriptional landscape of human cerebellar development
Aldinger, K. A., Thomson, Z., Haldipur, P., Deng, M., Timms, A. E., Hirano, M., Santpere, G., Roco, C., Rosenberg, A. B., Lorente-Galdos, B., Gulden, F. O., O'Day, D., Overman, L. M., Lisgo, S., Alexandre, P., Sestan, N., Doherty, D., Dobyns, W. B., Seelig, G., Glass, I. A., Millen, K. J.
10.1101/2020.06.30.174391 — Posted: 2020-07-01
A single-cell atlas of the human healthy airways
Deprez, M., Zaragosi, L.-E., Truchi, M., Ruiz Garcia, S., Arguel, M.-J., Lebrigand, K., Paquet, A., Pee'r, D., Marquette, C.-H., Leroy, S., BARBRY, P.
10.1101/2019.12.21.884759 — Posted: 2019-12-23
High throughput, error corrected Nanopore single cell transcriptome sequencing
Lebrigand, K., Magnone, V., BARBRY, P., Waldmann, R.
10.1101/831495 — Posted: 2019-11-05
Besca, a single-cell transcriptomics analysis toolkit to accelerate translational research
Maedler, S. C., Julien-Laferriere, A., Wyss, L., Phan, M., Kang, A. S. W., Ulrich, E., Schmucki, R., Zhang, J. D., Ebeling, M., Badi, L., Kam-Thong, T., Schwalie, P. C., Hatje, K.
10.1101/2020.08.11.245795 — Posted: 2020-09-01
Deep learning and alignment of spatially-resolved whole transcriptomes of single cells in the mouse brain with Tangram
Biancalani, T., Scalia, G., Buffoni, L., Avasthi, R., Lu, Z., Sanger, A., Tokcan, N., Vanderburg, C. R., Segerstolpe, A., Zhang, M., Avraham-Davidi, I., Vickovic, S., Nitzan, M., Ma, S., Buenrostro, J. D., Brown, N. B., Fanelli, D., Zhuang, X., Macosko, E., Regev, A.
10.1101/2020.08.29.272831 — Posted: 2020-09-24
DUBStepR: correlation-based feature selection for clustering single-cell RNA sequencing data
Ranjan, B., Sun, W., Park, J., Mishra, K., Xie, R., Alipour, F., Singhal, V., Schmidt, F., Joanito, I., Arul Rayan, N., Gek Liang Lim, M., Prabhakar, S.
10.1101/2020.10.07.330563 — Posted: 2021-03-05
Poised cell circuits in human skin are activated in disease
Reynolds, G., Vegh, P., Fletcher, J., Poyner, E., Stephenson, E., Goh, I., Botting, R., Huang, N., Olabi, B., Dubois, A., Dixon, D., Green, K., Maunder, D., Engelbert, J., Efremova, M., Polanski, K., Jardine, L., Jones, C., Ness, T., Horsfall, D., McGrath, J., Carey, C., Popescu, D.-M., Webb, S., Wang, X.-n., Sayer, B., Park, J.-E., Negri, V., Belokhvostova, D., Lynch, M., McDonald, D., Filby, A., Hagai, T., Meyer, K., Husain, A., Coxhead, J., Vento-Tormo, R., Behjati, S., Lisgo, S., Villani, A.-C., Bacardit, J., Jones, P., OToole, E., Ogg, G., Rajan, N., Reynolds, N., Teichmann, S., Watt, F.
10.1101/2020.11.05.369363 — Posted: 2020-11-05

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