Channel:  Human Cell Atlas

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

182 Articles

An integrated transcriptomic cell atlas of human neural organoids
He, Z., Dony, L., Fleck, J. S., Szalata, A., Li, K. X., Sliskovic, I., Lin, H.-C., Santel, M., Atamian, A., Quadrato, G., Sun, J., Pasca, S. P., Camp, G., Theis, F., Treutlein, B.
10.1101/2023.10.05.561097 — Posted: 2023-10-06
Bering: joint cell segmentation and annotation for spatial transcriptomics with transferred graph embeddings
Jin, K., Zhang, Z., Zhang, K., Viggiani, F., Callahan, C., Tang, J., Aronow, B. J., Shu, J.
10.1101/2023.09.19.558548 — Posted: 2023-09-22
Single-cell analysis of prenatal and postnatal human cortical development
Velmeshev, D., Perez, Y., Yan, Z., Valencia, J. E., Castaneda-Castellanos, D. R., Wang, L., Schirmer, L., Mayer, S., Wick, B., Wang, S., Nowakowski, T. J., Paredes, M., Huang, E. J. J., Kriegstein, A.
10.1101/2022.10.24.513555 — Posted: 2023-09-14
Human subcutaneous and visceral adipocyte atlases uncover classical and specialized adipocytes and depot-specific patterns
Lazarescu, O., Ziv Agam, M., Haim, Y., Hekselman, I., Jubran, J., Shneyour, A., Kitsberg, D., Levin, L., Liberty, I. F., Yoel, U., Dukhno, O., Adam, M., Korner, A., Murphy, R., Bluher, M., Habib, N., Rudich, A., Yeger-Lotem, E.
10.1101/2023.09.04.555678 — Posted: 2023-09-04
Spatial landmark detection and tissue registration with deep learning
Ekvall, M. N., Bergenstrahle, L., Andersson, A., Olegard, J., Czarnewski, P., Kall, L., Lundeberg, J.
10.1101/2023.08.24.554614 — Posted: 2023-08-26
Scalable querying of human cell atlases via a foundational model reveals commonalities across fibrosis-associated macrophages
Heimberg, G., Kuo, T. C., DePianto, D., Heigl, T., Diamant, N., Salem, O., Scalia, G., Biancalani, T., Rock, J., Turley, S., Corrada Bravo, H., Kaminker, J., Vander Heiden, J. A., Regev, A.
10.1101/2023.07.18.549537 — Posted: 2023-08-26
Polybacterial intracellular coinfection of epithelial stem cells in periodontitis
Easter, Q. T., Matuck, B. F., Stark, G. B., Worth, C. L., Predeus, A. V., Fremin, B., Huynh, K. T., Ranganathan, V., Pereira, D., Weaver, T., Miller, K., Perez, P., Hasuike, A., Chen, Z., Bush, M., Qu, X., Warner, B. M., Lee, J., Wallet, S. M., Sequeira, I., Tyc, K. M., Liu, J., Ko, K. I., Teichmann, S. A., Byrd, K. M.
10.1101/2023.08.23.554343 — Posted: 2023-08-24
multiDGD: A versatile deep generative model for multi-omics data
Schuster, V., Dann, E., Krogh, A., Teichmann, S.
10.1101/2023.08.23.554420 — Posted: 2023-08-23
Spatiotemporal molecular dynamics of the developing human thalamus
Kim, C., Shin, D., Wang, A., Nowakowski, T.
10.1101/2023.08.21.554174 — Posted: 2023-08-22
Consensus prediction of cell type labels with popV
Ergen, C., Xing, G., Xu, C., Jayasuriya, M., McGeever, E., Pisco, A. O., Streets, A. M., Yosef, N.
10.1101/2023.08.18.553912 — Posted: 2023-08-21

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