bioRxiv is receiving many new papers on coronavirus SARS-CoV-2.   A reminder: these are preliminary reports that have not been peer-reviewed. They should not be regarded as conclusive, guide clinical practice/health-related behavior, or be reported in news media as established information.

Channel : Human Cell Atlas

49 Articles

Systematic Comparison of High-throughput Single-Cell and Single-Nucleus Transcriptomes during Cardiomyocyte Differentiation
Selewa, A., Dohn, R., Eckart, H., Lozano, S., Xie, B., Gauchat, E., Elorbany, R., Rhodes, K., Burnett, J., Gilad, Y., Pott, S., Basu, A.
10.1101/585901 — Posted: 2019-03-26
Cell segmentation-free inference of cell types from in situ transcriptomics data
Park, J., Choi, W., Tiesmeyer, S., Long, B., Borm, L. E., Garren, E., Nguyen, T. N., Tasic, B., Codeluppi, S., Graf, T., Schlesner, M., Stegle, O., Eils, R., Ishaque, N.
10.1101/800748 — Posted: 2020-11-28
Deep generative model embedding of single-cell RNA-Seq profiles on hyperspheres and hyperbolic spaces
Ding, J., Regev, A.
10.1101/853457 — Posted: 2019-11-25
Distinct microbial and immune niches of the human colon
James, K. R., Gomes, T., Elmentaite, R., Kumar, N., Gulliver, E. L., King, H. W., Stares, M. D., Bareham, B. R., Ferdinand, J. R., Petrova, V., Polanski, K., Forster, S. C., Jarvis, L. B., Suchanek, O., Howlett, S., James, L., Jones, J. L., Meyer, K. B., Clatworthy, M. R., Saeb-Parsy, K., Lawley, T., Teichmann, S. A.
10.1101/2019.12.12.871657 — Posted: 2019-12-12
Sampling artifacts in single-cell genomics cohort studies
Massoni-Badosa, R., Iacono, G., Moutinho, C., Kulis, M., Palau, N., Marchese, D., Rodriguez-Ubreva, J., Ballestar, E., Rodriguez-Esteban, G., Marsal, S., Aymerich, M., Colomer, D., Campo, E., Jula, A., Martin-Subero, J. I., Heyn, H.
10.1101/2020.01.15.897066 — Posted: 2020-01-15
A cell atlas of human thymic development defines T cell repertoire formation
Park, J.-E., Botting, R. A., Dominguez Conde, C., Popescu, D.-M., Lavaert, M., Kunz, D. J., Stephenson, E., Ragazzini, R., Tuck, E., Wilbrey-Clark, A. L., Ferdinand, J. R., Webb, S., Maunder, D., Vandamme, N., Mahbubani, K. T., Polanski, K., Mamanova, L., Fuller, A., Filby, A., Reynolds, G., Dixon, D., Saeb-Parsy, K., Lisgo, S., Henderson, D., Vento-Tormo, R., Meyer, K. B., Saeys, Y., Bonfanti, P., Behjati, S., Clatworthy, M. R., Taghon, T., Haniffa, M., Teichmann, S. A.
10.1101/2020.01.28.911115 — Posted: 2020-01-28
SARS-CoV-2 receptor ACE2 and TMPRSS2 are predominantly expressed in a transient secretory cell type in subsegmental bronchial branches
Lukassen, S., Chua, R. L., Trefzer, T., Kahn, N. C., Schneider, M. A., Muley, T., Winter, H., Meister, M., Veith, C., Boots, A. W., Hennig, B. P., Kreuter, M., Conrad, C., Eils, R.
10.1101/2020.03.13.991455 — Posted: 2020-03-30
Cells and gene expression programs in the adult human heart
Litvinukova, M., Talavera-Lopez, C., Maatz, H., Reichart, D., Worth, C. L., Lindberg, E. L., Kanda, M., Polanski, K., Fasouli, E. S., Samari, S., Roberts, K., Tuck, E., Heinig, M., DeLaughter, D., McDonough, B., Wakimoto, H., Gorham, J. M., Nadelmann, E., Mahbubani, K. T., Saeb-Parsy, K., Patone, G., Boyle, J. J., Zhang, H., Zhang, H., Viveiros, A., Oudit, G., Bayraktar, O., Seidman, J. G., Seidman, C., Noseda, M., Hubner, N., Teichmann, S. A.
10.1101/2020.04.03.024075 — Posted: 2020-04-10
Single-cell atlas of a non-human primate reveals new pathogenic mechanisms of COVID-19
Han, L., Wei, X., Liu, C., Volpe, G., Wang, Z., Pan, T., Yuan, Y., Lei, Y., Lai, Y., Ward, C., Yu, Y., Wang, M., Shi, Q., Wu, T., Wu, L., Liu, Y., Wang, C., Zhang, Y., Sun, H., Yu, H., Zhuang, Z., Tang, T., Huang, Y., Lu, H., Xu, L., Xu, J., Cheng, M., Liu, Y., Wong, C. W., Tan, T., Ji, W., Maxwell, P. H., Yang, H., Wang, J., Zhu, S., Liu, S., Xu, X., Hou, Y., Esteban, M. A., Liu, L.
10.1101/2020.04.10.022103 — Posted: 2020-04-24
Single cell profiling of immature human postnatal thymocytes resolves the complexity of intra-thymic lineage differentiation and thymus seeding precursors.
Lavaert, M., Liang, K. L., Vandamme, N., Park, J.-E., Roels, J., Kowalczyk, M. S., Li, B., Ashenberg, O., Tabaka, M., Dionne, D., Tickle, T. L., Slyper, M., Rozenblatt-Rosen, O., Vandekerckhove, B., Leclercq, G., Regev, A., Van Vlierberghe, P., Guilliams, M., Teichmann, S. A., Saeys, Y., Taghon, T.
10.1101/2020.04.07.007237 — Posted: 2020-04-08

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