Channel:  Human Cell Atlas

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

182 Articles

Spatially resolved single-cell atlas of the lung in fatal Covid19 in an African population reveals a distinct cellular signature and an interferon gamma dominated response
Nyirenda, J., Hardy, O., Silva Filho, J. L., Herder, V., Attipa, C., Ndovi, C., Siwombo, M., Namalima, T., Suwedi, L., Nyasulu, W., Ngulube, T., Nyirenda, D., Mvaya, L., Phiri, J., Chasweka, D., Eneya, C., Makwinja, C., Phiri, C., Ziwoya, F., Tembo, A., Makwangwala, K., Khoswe, S., Banda, P., Morton, B., Hilton, O., Lawrence, S., Frere dos Reis, M., Cardoso Melo, G., Vinicious Guimaros de Lecerda, M., Trindande Maranhao Costa, F., Marcelo Monteiro, W., Carlos de Lima Fereirra, L., Johnson, C., Mcguinness, D., Jambo, K., Haley, M. J., Kumwenda, B., Palmarini, M., Barnes, K. G., Denno, D. M., Vo
10.1101/2023.11.16.566964 — Posted: 2023-12-12
uniLIVER: a Human Liver Cell Atlas for Data-Driven Cellular State Mapping
Wu, Y., Fan, Y., Miao, Y., Li, Y., Chen, Z., Du, G., Diao, J., Chen, Y.-A., Ye, M., You, R., Chen, A., Chen, Y., Li, W., Guo, W., Dong, J., Zhang, X., Wang, Y., Gu, J.
10.1101/2023.12.09.570903 — Posted: 2023-12-09
An integrated transcriptomic cell atlas of human endoderm-derived organoids
Xu, Q., Halle, L., Hediyeh-zadeh, S., Kuijs, M., Kilik, U., Yu, Q., Frum, T., Adam, L., Parikh, S., Gander, M., Kfuri-Rubens, R., Klein, D., He, Z., Fleck, J. S., Oost, K., Kahnwald, M., Barbiero, S., Mitrofanova, O., Maciag, G., Jensen, K. B., Lutolf, M., Liberali, P., Beumer, J., Spence, J. R., Treutlein, B., Theis, F. J., Camp, J. G.
10.1101/2023.11.20.567825 — Posted: 2023-12-04
A deep lung cell atlas reveals cytokine-mediated lineage switching of a rare cell progenitor of the human airway epithelium
Waghray, A., Monga, I., Lin, B., Shah, V., Slyper, M., Giotti, B., Xu, J., Waldman, J., Dionne, D., Nguyen, L. T., Lou, W., Cai, P., Park, E., Muus, C., Sun, J., Surve, M. V., Yang, L. C. C., Rozenblatt-Rosen, O., Dolerey, T. M., Saladi, S. V., Tsankov, A. M., Regev, A., Rajagopal, J.
10.1101/2023.11.28.569028 — Posted: 2023-11-29
Cell type-specific effects of age and sex on human cortical neurons
Chien, J.-F., Liu, H., Wang, B.-A., Luo, C., Bartlett, A., Castanon, R., Johnson, N. D., Nery, J. R., Osteen, J., Li, J., Altshul, J., Kenworthy, M., Valadon, C., Liem, M., Claffey, N., O'Connor, C., Seeker, L. A., Ecker, J. R., Behrens, M. M., Mukamel, E. A.
10.1101/2023.11.11.566717 — Posted: 2023-11-15
A single-cell atlas of transcribed cis-regulatory elements in the human genome
Moody, J., Kouno, T., Kojima, M., Koya, I., Leon, J., Suzuki, A., Hasegawa, A., Akiyama, T., Akiyama, N., Amagai, M., Chang, J.-C., Fukushima-Nomura, A., Handa, M., Hino, K., Hino, M., Hirata, T., Imai, Y., Inoue, K., Kawasaki, H., Kimura, T., Kinoshita, T., Kubo, K.-i., Kunii, Y., Lopez-Redondo, F., Manabe, R.-i., Miyai, T., Morimoto, S., Nagaoka, A., Nakajima, J., Noma, S., Okazaki, Y., Ozaki, K., Saeki, N., Sakai, H., Seyama, K., Shibayama, Y., Sujino, T., Tagami, M., Takahashi, H., Takao, M., Takeshita, M., Takiuchi, T., Terao, C., Yip, C. W., Yoshinaga, S., Okano, H., Yamamoto, K., Kasuka
10.1101/2023.11.13.566791 — Posted: 2023-11-14
Integrated multi-omics single cell atlas of the human retina
Li, J., Wang, J., Ibarra, I. L., Cheng, X., Luecken, M. D., Lu, J., Monavarfeshani, A., Yan, W., Zheng, Y., Zuo, Z., Colborn, S. L. Z., Cortez, B. S., Owen, L. A., Tran, N. M., Shekhar, K., Sanes, J. R., Stout, J. T., Chen, S., Li, Y., DeAngelis, M. M., Theis, F. J., Chen, R.
10.1101/2023.11.07.566105 — Posted: 2023-11-08
Spatial protein and RNA analysis on the same tissue section using MICS technology
Neil, E., Park, D., Hennessey, R. C., DiBiasio, E. C., DiBuono, M., Lafayette, H., Lloyd, E., Lo, H., Femel, J., Makrigiorgos, A., Soliman, S., Mangiardi, D., Praveen, P., Rüberg, S., Staubach, F., Hindman, R., Rothmann, T., Meyer, H., Wantenaar, T., Wang, J., Müller, W., Pinard, R., Bosio, A.
10.1101/2023.10.27.564191 — Posted: 2023-11-07
Cutaneous T cell lymphoma atlas reveals malignant Th2 cells supported by a B cell-rich microenvironment
Li, R., Strobl, J., Poyner, E. F. M., Torabi, F., Mazin, P., Chipampe, N.-J., Stephenson, E., Gardner, L., Olabi, B., Coulthard, R., Botting, R. A., Zila, N., Prigmore, E., Gopee, N., Engelbert, J., Goh, I., Chan, H. M., Johnson, H., Ellis, J., Rowe, V., Tun, W., Reynolds, G., Foster, A. R., Gambardella, L., Winheim, E., Admane, C., Rumney, B., Steele, L., Jardine, L., Nenonen, J., Pickard, K., Lumley, J., Hampton, P., Hu, S., Liu, F., Liu, X., Horsfall, D., Basurto-Lozada, D., Grimble, L., Bacon, C. M., Weatherhead, S., Brauner, H., Wang, Y., Bai, F., Reynolds, N. J., Allen, J. E., Jonak, C.
10.1101/2023.11.06.565474 — Posted: 2023-11-07
An integrated single-cell reference atlas of the human endometrium
Mareckova, M., Garcia-Alonso, L., Moullet, M., Lorenzi, V., Petryszak, R., Sancho-Serra, C., Oszlanczi, A., Icoresi Mazzeo, C., Hoffman, S., Krassowski, M., Garbutt, K., Kelava, I., Gaitskell, K., Yancheva, S., Von Woon, E., Male, V., Granne, I., Hellner, K., Mahbubani, K. T., Saeb-Parsy, K., Lotfollahi, M., Prigmore, E., Southcombe, J., Dragovic, R. A., Becker, C. M., Zondervan, K. T., Vento-Tormo, R.
10.1101/2023.11.03.564728 — Posted: 2023-11-05

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