Channel:  Human Cell Atlas

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

141 Articles

Systematic comparative analysis of single cell RNA-sequencing methods
Ding, J., Adiconis, X., Simmons, S. K., Kowalczyk, M. S., Hession, C. C., Marjanovic, N. D., Hughes, T. K., Wadsworth, M. H., Burks, T., Nguyen, L. T., Kwon, J. Y. H., Barak, B., Ge, W., Kedaigle, A. J., Carroll, S., Li, S., Hacohen, N., Rozenblatt-Rosen, O., Shalek, A. K., Villani, A.-C., Regev, A., Levin, J. Z.
10.1101/632216 — Posted: 2019-05-23
Rewiring of the cellular and inter-cellular landscape of the human colon during ulcerative colitis
Smillie, C. S., Biton, M., Ordovas-Montanes, J., Sullivan, K. M., Burgin, G., Graham, D. B., Herbst, R. H., Rogel, N., Slyper, M., Waldman, J., Sud, M., Andrews, E., Haber, A. L., Vickovic, S., Dionne, D., Nguyen, L. T., Villani, A. C., Hofree, M., Creasey, E. A., Huang, H., Rozenblatt-Rosen, O., Garber, J. J., Khalili, H., Desch, A. N., Daly, M. J., Ananthakrishnan, A. N., Shalek, A. K., Xavier, R. J., Regev, A.
10.1101/455451 — Posted: 2019-05-25
Decoding the development of the blood and immune systems during human fetal liver haematopoiesis
Popescu, D.-M., Botting, R. A., Stephenson, E., Green, K., Jardine, L., Calderbank, E. F., Efremova, M., Acres, M., Maunder, D., Vegh, P., Goh, I., Gitton, Y., Park, J., Polanski, K., Vento-Tormo, R., Miao, Z., Rowell, R., McDonald, D., Fletcher, J., Dixon, D., Poyner, E., Reynolds, G., Mather, M., Moldovan, C., Mamanova, L., Greig, F., Young, M. D., Meyer, K., Lisgo, S., Bacardit, J., Fuller, A., Millar, B., Innes, B., Lindsay, S., Stubbington, M. J. T., Kowalczyk, M. D., Li, B. D., Ashenbrg, O., Tabaka, M. D., Dionne, D., Tickle, T. L., Slyper, M., Rozenblatt-Rosen, O., Filby, A., Villani, A
10.1101/654210 — Posted: 2019-05-31
A Human Liver Cell Atlas: Revealing Cell Type Heterogeneity and Adult Liver Progenitors by Single-Cell RNA-sequencing
Aizarani, N., Saviano, A., Sagar, , Mailly, L., Durand, S., Pessaux, P., Baumert, T. F., Grün, D.
10.1101/649194 — Posted: 2019-06-20
Single cell transcriptome atlas of immune cells in human small intestine and in celiac disease
Stunnenberg, H., Atlasy, N., Bujko, A., Brazda, P. B., Janssen-Megens, E., Bakkenvold, E. S., Jahnsen, J., Jahsen, F.
10.1101/721258 — Posted: 2019-08-01
Generation of human neural retina transcriptome atlas by single cell RNA sequencing
Lukowski, S., Lo, C., Sharov, A., Nguyen, Q., Fang, L., Hung, S., Zhu, L., Zhang, T., Nguyen, T., Senabouth, A., Jabbari, J., Welby, E., Sowden, J., Waugh, H., Mackey, A., Pollock, G., Lamb, T., Wang, P.-Y., Hewitt, A., Gillies, M., Powell, J., Wong, R.
10.1101/425223 — Posted: 2019-08-03
Lung, spleen and oesophagus tissue remains stable for scRNAseq in cold preservation
Madissoon, E., Wilbrey-Clark, A. L., Miragaia, R. J., Saeb-Parsy, K., Mahbubani, K. T., Georgakopoulos, N., Harding, P., Polanski, K., Nowicki-Osuch, K., Fitzgerald, R. C., Loudon, K. W., Ferdinand, J. R., Clatworthy, M. R., Tsingene, A., van Dongen, S., Dabrowska, M., Patel, M., Stubbington, M. J., Teichmann, S., Stegle, O., Meyer, K. B.
10.1101/741405 — Posted: 2019-08-31
Gene set inference from single-cell sequencing data using a hybrid of matrix factorization and variational autoencoders
Lukassen, S., Ten, F. W., Eils, R., Conrad, C.
10.1101/740415 — Posted: 2019-09-02
The enteric nervous system of the human and mouse colon at a single-cell resolution
Drokhlyansky, E., Smillie, C. S., Van Wittenberghe, N., Ericsson, M., Griffin, G. K., Dionne, D., Cuoco, M. S., Goder-Reiser, M. N., Sharova, T., Aguirre, A. J., Boland, G. M., Graham, D., Rozenblatt-Rosen, O., Xavier, R. J., Regev, A.
10.1101/746743 — Posted: 2019-09-04
Resolving the fibrotic niche of human liver cirrhosis using single-cell transcriptomics
Ramachandran, P., Dobie, R., Wilson-Kanamori, J. R., Dora, E. F., Henderson, B. E., Taylor, R. S., Matchett, K. P., Portman, J. R., Efremova, M., Vento-Tormo, R., Luu, N. T., Weston, C. J., Newsome, P. N., Harrison, E. M., Mole, D. J., Wigmore, S. J., Iredale, J. P., Tacke, F., Pollard, J. W., Ponting, C. P., Marioni, J., Teichmann, S. A., Henderson, N. C.
10.1101/766113 — Posted: 2019-09-12

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