Channel:  Human Cell Atlas

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

152 Articles

Monopogen: single nucleotide variant calling from single cell sequencing
Dou, J., Tan, Y., Kock, k. H., Wang, J., Cheng, X., Tan, L. M., Han, K. Y., Hon, C.-C., Park, W. Y., Shin, J. W., Chen, H., Prabhakar, S., Navin, N., Chen, R., Chen, K.
10.1101/2022.12.04.519058 — Posted: 2022-12-07
Identification of novel myeloid-derived cell states with implication in cancer outcome
Guimaraes, G. R., Maklouf, G. R., Teixeira, C. E., de Oliveira Santos, L., Tessarollo, N. G., Pretti, M. A. M., Toledo, N. E., da Cruz, J. G. V., Falchetti, M., Dimas, M. M., Serain, A. F., de Macedo, F. C., Rodrigues, F. R., Bastos, N. C., da Silva, J. L., Lummertz-Rocha, E., Chaves, C. B. P., de Melo, A. C., Moraes-Vieira, P. M. M., Mori, M. A., Boroni, M.
10.1101/2023.01.04.522727 — Posted: 2023-08-10
SuperCellCyto: enabling efficient analysis of large scale cytometry datasets
Putri, G. H., Howitt, G., Marsh-Wakefield, F., Ashhurst, T. M., Phipson, B.
10.1101/2023.08.14.553168 — Posted: 2024-01-30
A human embryonic limb cell atlas resolved in space and time
Zhang, B., He, P., Lawrence, J. E., Wang, S., Tuck, E., Williams, B. A., Roberts, K., Kleshchevnikov, V., Mamanova, L., Bolt, L., Polanski, K., Elmentaite, R., Fasouli, E. S., Prete, M., He, X., Yayon, N., Fu, Y., Yang, H., Liang, C., Zhang, H., Blain, R., Chedotal, A., Fitzpatrick, D., Firth, H., Dean, A., Marioni, J. C., Barker, R. A., Storer, M. A., Wold, B., Zhang, H., Teichmann, S.
10.1101/2022.04.27.489800 — Posted: 2023-03-19
Scalable querying of human cell atlases via a foundational model reveals commonalities across fibrosis-associated macrophages
Heimberg, G., Kuo, T. C., DePianto, D., Heigl, T., Diamant, N., Salem, O., Scalia, G., Biancalani, T., Rock, J., Turley, S., Corrada Bravo, H., Kaminker, J., Vander Heiden, J. A., Regev, A.
10.1101/2023.07.18.549537 — Posted: 2023-08-26
multiDGD: A versatile deep generative model for multi-omics data
Schuster, V., Dann, E., Krogh, A., Teichmann, S.
10.1101/2023.08.23.554420 — Posted: 2023-08-23
Polybacterial intracellular coinfection of epithelial stem cells in periodontitis
Easter, Q. T., Matuck, B. F., Stark, G. B., Worth, C. L., Predeus, A. V., Fremin, B., Huynh, K. T., Ranganathan, V., Pereira, D., Weaver, T., Miller, K., Perez, P., Hasuike, A., Chen, Z., Bush, M., Qu, X., Warner, B. M., Lee, J., Wallet, S. M., Sequeira, I., Tyc, K. M., Liu, J., Ko, K. I., Teichmann, S. A., Byrd, K. M.
10.1101/2023.08.23.554343 — Posted: 2023-08-24
Human subcutaneous and visceral adipocyte atlases uncover classical and specialized adipocytes and depot-specific patterns
Lazarescu, O., Ziv Agam, M., Haim, Y., Hekselman, I., Jubran, J., Shneyour, A., Kitsberg, D., Levin, L., Liberty, I. F., Yoel, U., Dukhno, O., Adam, M., Korner, A., Murphy, R., Bluher, M., Habib, N., Rudich, A., Yeger-Lotem, E.
10.1101/2023.09.04.555678 — Posted: 2023-09-04
Consensus prediction of cell type labels with popV
Ergen, C., Xing, G., Xu, C., Jayasuriya, M., McGeever, E., Pisco, A. O., Streets, A. M., Yosef, N.
10.1101/2023.08.18.553912 — Posted: 2023-08-21
Cell type-specific gene expression dynamics during human brain maturation
Steyn, C., Mishi, R., Fillmore, S., Verhoog, M. B., More, J., Rohlwink, U. K., Melvill, R., Butler, J., Enslin, J. M. N., Jacobs, M., Quinones, S., Dulla, C. G., Raimondo, J. V., Figaji, A., Hockman, D.
10.1101/2023.09.29.560114 — Posted: 2023-09-29

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