bioRxiv/medRxiv TRiP Review Activity

31 Reviews — Gigabyte — Bioinformatics

Most recent first Previous |  Page 2: Articles 11-20  | Next

RiboSnake - a user-friendly, robust, reproducible, multipurpose and documentation-extensive pipeline for 16S rRNA gene microbiome analysis
Doerr, A.-K., Welling, J., Doerr, A., Gosch, J., Moehlen, H., Schmithausen, R., Kehrmann, J., Meyer, F., Kraiselburd, I.
10.1101/2024.08.06.606757 — Posted: 2024-08-08 — Discussion: 2024-09-04  Gigabyte
Low-coverage whole genome sequencing for a highly selective cohort of severe COVID-19 patients
Santos, R., Moreno-Torres, V., Pintos, I., Corral, O., de Mendoza, C., Soriano, V., Corpas, M.
10.1101/2024.01.28.577610 — Posted: 2024-01-29 — Discussion: 2024-07-01  Gigabyte
PhysiCell Studio: a graphical tool to make agent-based modeling more accessible
Heiland, R., Bergman, D. R., Lyons, B., Cass, J., L. Rocha, H., Ruscone, M., Noël, V., Macklin, P.
10.1101/2023.10.24.563727 — Posted: 2023-10-27 — Discussion: 2024-07-01  Gigabyte
Molecular Property Diagnostic Suite for COVID-19 (MPDSCOVID-19): An open access disease specific drug discovery portal
Sastry, G. N., Priyadarsinee, L., Jamir, E., Nagamani, S., Mahanta, H. J., Kumar, N., John, L., Sarma, H., Kumar, A., Gaur, A. S., Sahoo, R., Vaikundamani, S., Murugan, N. A., Priyakumar, U. D., Raghava, G. P. S., Bharatam, P., Ramakrishnan, P., Subramanian, V., Sastry, G. M.
10.1101/2023.08.29.555437 — Posted: 2023-08-30 — Discussion: 2024-03-18  Gigabyte
SAW: An efficient and accurate data analysis workflow for Stereo-seq spatial transcriptomics
Gong, C., Li, S., Wang, L., Zhao, F., Fang, S., Yuan, D., Zhao, Z., He, Q., Li, M., Liu, W., Li, Z., Xie, H., Liao, S., Chen, A., Zhang, Y., Li, Y., Xu, X.
10.1101/2023.08.20.554064 — Posted: 2023-08-21 — Discussion: 2024-02-26  Gigabyte
Generating single-cell gene expression profiles for high-resolution spatial transcriptomics based on cell boundary images
Zhang, B., Li, M., Kang, Q., Deng, Z., Qin, H., Su, K., Feng, X., Chen, L., Liu, H., Fang, S., Zhang, Y., Li, Y., Brix, S., Xu, X.
10.1101/2023.12.25.573324 — Posted: 2023-12-26 — Discussion: 2024-02-26  Gigabyte
BatchEval Pipeline: Batch Effect Evaluation Workflow for Multiple Datasets Joint Analysis
Zhang, C., Kang, Q., Li, M., Xie, H., Fang, S., Xu, X.
10.1101/2023.10.08.561465 — Posted: 2023-10-10 — Discussion: 2024-02-26  Gigabyte
Nanopore Adaptive Sampling Enriches for Antimicrobial Resistance Genes in Microbial Communities
Wrenn, D. C., Drown, D. M.
10.1101/2023.06.27.546783 — Posted: 2023-06-30 — Discussion: 2023-12-25  Gigabyte
Genome assembly of the hybrid grapevine Vitis Chambourcin
Patel, S., Harris, Z. N., Londo, J., Miller, A., Fennell, A.
10.1101/2023.01.18.524616 — Posted: 2023-01-20 — Discussion: 2023-07-03  Gigabyte
svaRetro and svaNUMT: modular packages for annotation of retrotransposed transcripts and nuclear integration of mitochondrial DNA in genome sequencing data
Dong, R., Cameron, D. L., Bedo, J., Papenfuss, A. T.
10.1101/2021.08.18.456578 — Posted: 2021-08-19 — Discussion: 2022-10-08  Gigabyte

Evaluation Sources