bioRxiv/medRxiv TRiP Review Activity

39 Reviews — Peer Community In — Bioinformatics

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RAREFAN: a webservice to identify REPINs and RAYTs in bacterial genomes
Fortmann-Grote, C., Balk, J., Bertels, F.
10.1101/2022.05.22.493013 — Posted: 2022-05-24 — Discussion: 2023-02-08  Peer Community In
Toeholder: a software for automated design and in silico validation of toehold riboswitches
Cisneros Caballero, A. F., Rouleau, F. D., Bautista, C., Lemieux, P., Dumont-Leblond, N.
10.1101/2021.11.09.467922 — Posted: 2021-11-11 — Discussion: 2022-12-17  Peer Community In
Parchment Glutamine Index (PQI): A novel method to estimate glutamine deamidation levels in parchment collagen obtained from low-quality MALDI-TOF data
Nair, B., Palomo, I. R., Markussen, B., Wiuf, C., Collins, M. J.
10.1101/2022.03.13.483627 — Posted: 2022-03-14 — Discussion: 2022-10-03  Peer Community In
HMMploidy: inference of ploidy levels from short-read sequencing data
Soraggi, S., Rhodes, J., Altinkaya, I., Tarrant, O., Balloux, F., Fisher, M. C., Fumagalli, M.
10.1101/2021.06.29.450340 — Posted: 2021-06-30 — Discussion: 2022-09-28  Peer Community In
CulebrONT: a streamlined long reads multi-assembler pipeline for prokaryotic and eukaryotic genomes
Orjuela, J., Comte, A., Ravel, S., Charriat, F., Vi, T., Sabot, F., Cunnac, S.
10.1101/2021.07.19.452922 — Posted: 2021-07-20 — Discussion: 2022-07-22  Peer Community In
A Linear-Time Solution to the Labeled Robinson-Foulds Distance Problem
Briand, S., Dessimoz, C., El-Mabrouk, N., Nevers, Y.
10.1101/2020.09.14.293522 — Posted: 2020-09-15 — Discussion: 2021-07-23  Peer Community In
TransPi - a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
Rivera-Vicens, R. E., Garcia Escudero, C., Conci, N., Eitel, M., Wörheide, G.
10.1101/2021.02.18.431773 — Posted: 2021-02-18 — Discussion: 2021-07-19  Peer Community In
Pipeline to detect the relationship between transposable elements and adjacent genes in host genome
Meguerditchian, C., Ergun, A., DECROOCQ, V., LEFEBVRE, M., Bui, Q. T.
10.1101/2021.02.25.432867 — Posted: 2021-02-26 — Discussion: 2021-07-06  Peer Community In
A flexible pipeline combining bioinformatic correction tools for prokaryotic and eukaryotic metabarcoding
Brandt, M. I., Trouche, B., Quintric, L., Wincker, P., Poulain, J., ARNAUD-HAOND, S.
10.1101/717355 — Posted: 2019-08-01 — Discussion: 2020-02-05  Peer Community In

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