bioRxiv/medRxiv TRiP Review Activity

39 Reviews — Peer Community In — Bioinformatics

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Detection and identification of transposable element transcripts using Long Read RNA-seq in Drosophila germline tissues
Rebollo, R., Cumunel, E., Mary, A., Sabot, F., Burlet, N., Gillet, B., Hughes, S., Siqueira Oliveira, D., Goubert, C., Fablet, M., Vieira, C., Lacroix, V.
10.1101/2023.05.27.542554 — Posted: 2023-05-30 — Discussion: 2024-08-06  Peer Community In
LukProt: A database of eukaryotic predicted proteins designed for investigations of animal origins
Sobala, L. F.
10.1101/2024.01.30.577650 — Posted: 2024-02-01 — Discussion: 2024-08-05  Peer Community In
Revisiting pangenome openness with k-mers
Parmigiani, L., Wittler, R., Stoye, J.
10.1101/2022.11.15.516472 — Posted: 2022-11-16 — Discussion: 2024-04-10  Peer Community In
PaleoProPhyler: a reproducible pipeline for phylogenetic inference using ancient proteins
Patramanis, I., Ramos-Madrigal, J., Cappellini, E., Racimo, F.
10.1101/2022.12.12.519721 — Posted: 2022-12-13 — Discussion: 2023-09-19  Peer Community In
A general minimal perfect hash function for canonical k-mers on arbitrary alphabets with an application to DNA sequences
Wittler, R.
10.1101/2023.03.09.531845 — Posted: 2023-03-12 — Discussion: 2023-09-18  Peer Community In
COVFlow: virus phylodynamics analyses from selected SARS-CoV-2 sequences
Danesh, G., Boennec, C., Verdurme, L., Roussel, M., Trombert, S., Visseaux, B., Haim-Boukobza, S., Alizon, S.
10.1101/2022.06.17.496544 — Posted: 2022-06-17 — Discussion: 2023-09-11  Peer Community In
Efficient k-mer based curation of raw sequence data: application in Drosophila suzukii
Gautier, M.
10.1101/2023.04.18.537389 — Posted: 2023-04-20 — Discussion: 2023-08-09  Peer Community In
DRomics, a workflow to model and make sense of dose-response (multi-)omics data in (eco)toxicology
Delignette-Muller, M. L., Billoir, E., Siberchicot, A., Larras, F.
10.1101/2023.02.09.527852 — Posted: 2023-02-10 — Discussion: 2023-07-22  Peer Community In
Efficient Bayesian inference of phylogenetic trees from large scale, low-depth genome-wide single-cell data
Dorri, F., Salehi, S., Chern, K., Funnell, T., Williams, M., Lai, D., Andronescu, M., Campbell, K. R., McPherson, A., Aparicio, S., Roth, A., Shah, S. P., Bouchard-Cote, A.
10.1101/2020.05.06.058180 — Posted: 2020-05-07 — Discussion: 2023-04-18  Peer Community In
MacSyFinder v2: Improved modelling and search engine to identify molecular systems in genomes
Neron, B., Denise, R., Coluzzi, C., Touchon, M., Rocha, E. P. C., Abby, S. S.
10.1101/2022.09.02.506364 — Posted: 2022-09-04 — Discussion: 2023-02-24  Peer Community In

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