bioRxiv/medRxiv TRiP Review Activity

37 Reviews — Peer Community In — Bioinformatics

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Revisiting pangenome openness with k-mers
Parmigiani, L., Wittler, R., Stoye, J.
10.1101/2022.11.15.516472 — Posted: 2022-11-16 — Discussion: 2024-04-10  Peer Community In
PaleoProPhyler: a reproducible pipeline for phylogenetic inference using ancient proteins
Patramanis, I., Ramos-Madrigal, J., Cappellini, E., Racimo, F.
10.1101/2022.12.12.519721 — Posted: 2022-12-13 — Discussion: 2023-09-19  Peer Community In
A general minimal perfect hash function for canonical k-mers on arbitrary alphabets with an application to DNA sequences
Wittler, R.
10.1101/2023.03.09.531845 — Posted: 2023-03-12 — Discussion: 2023-09-18  Peer Community In
COVFlow: virus phylodynamics analyses from selected SARS-CoV-2 sequences
Danesh, G., Boennec, C., Verdurme, L., Roussel, M., Trombert, S., Visseaux, B., Haim-Boukobza, S., Alizon, S.
10.1101/2022.06.17.496544 — Posted: 2022-06-17 — Discussion: 2023-09-11  Peer Community In
Efficient k-mer based curation of raw sequence data: application in Drosophila suzukii
Gautier, M.
10.1101/2023.04.18.537389 — Posted: 2023-04-20 — Discussion: 2023-08-09  Peer Community In
DRomics, a workflow to model and make sense of dose-response (multi-)omics data in (eco)toxicology
Delignette-Muller, M. L., Billoir, E., Siberchicot, A., Larras, F.
10.1101/2023.02.09.527852 — Posted: 2023-02-10 — Discussion: 2023-07-22  Peer Community In
Efficient Bayesian inference of phylogenetic trees from large scale, low-depth genome-wide single-cell data
Dorri, F., Salehi, S., Chern, K., Funnell, T., Williams, M., Lai, D., Andronescu, M., Campbell, K. R., McPherson, A., Aparicio, S., Roth, A., Shah, S. P., Bouchard-Cote, A.
10.1101/2020.05.06.058180 — Posted: 2020-05-07 — Discussion: 2023-04-18  Peer Community In
MacSyFinder v2: Improved modelling and search engine to identify molecular systems in genomes
Neron, B., Denise, R., Coluzzi, C., Touchon, M., Rocha, E. P. C., Abby, S. S.
10.1101/2022.09.02.506364 — Posted: 2022-09-04 — Discussion: 2023-02-24  Peer Community In
RAREFAN: a webservice to identify REPINs and RAYTs in bacterial genomes
Fortmann-Grote, C., Balk, J., Bertels, F.
10.1101/2022.05.22.493013 — Posted: 2022-05-24 — Discussion: 2023-02-08  Peer Community In
Toeholder: a software for automated design and in silico validation of toehold riboswitches
Cisneros Caballero, A. F., Rouleau, F. D., Bautista, C., Lemieux, P., Dumont-Leblond, N.
10.1101/2021.11.09.467922 — Posted: 2021-11-11 — Discussion: 2022-12-17  Peer Community In

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