bioRxiv/medRxiv TRiP Review Activity

506 Reviews — All Partners — Bioinformatics

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Benchmarking supervised signature-scoring methods for single-cell RNA sequencing data in cancer
Zheng, S., Nighat, N., Ye, Z., Chen, Y., Wang, X.
10.1101/2021.06.29.450404 — Posted: 2021-07-01 — Discussion: 2022-02-18  eLife
Rapid, Reference-Free Human Genotype Imputation with Denoising Autoencoders
Dias, R., Evans, D., Chen, S.-F., Chen, K.-Y., Chan, L., Torkamani, A.
10.1101/2021.12.01.470739 — Posted: 2021-12-02 — Discussion: 2022-02-16  eLife
Genetic, metabolic, and molecular insights into the diverse outcomes of diet-induced obesity in mice
Bachmann, A. M., Morel, J.-D. H., El Alam, G., Rodriguez-Lopez, S., de lima, T. I., Goeminne, L. J. E., Benegiamo, G., Bou Sleiman, M. S., Auwerx, J.
10.1101/2021.09.02.458729 — Posted: 2021-09-05 — Discussion: 2022-02-13  eLife
Discovering fragment length signatures of circulating tumor DNA using Non-negative Matrix Factorization
Renaud, G., Noergaard, M., Lindberg, J., Groenberg, H., De Laere, B., Jensen, J. B., Borre, M., Andersen, C. L., Soerensen, K. D., Maretty, L., Besenbacher, S.
10.1101/2021.06.09.447533 — Posted: 2021-06-10 — Discussion: 2022-02-11  eLife
Genomic identification, annotation, and comparative analysis of Vacuolar-type ATP synthase subunits in Diaphorina citri
Grace, R., Massimino, C., Shippy, T., Tank, W., Hosmani, P. S., Flores-Gonzalez, M., Mueller, L. A., Hunter, W. B., Benoit, J. B., Brown, S. J., Delia, T., Saha, S.
10.1101/2021.10.18.464890 — Posted: 2021-10-19 — Discussion: 2022-02-10  Gigabyte
CAMITAX: Taxon labels for microbial genomes
Bremges, A., Fritz, A., McHardy, A. C.
10.1101/532473 — Posted: 2019-01-29 — Discussion: 2022-02-10  GigaScience
SwiftOrtho: a Fast, Memory-Efficient, Multiple Genome Orthology Classifier
Hu, X., Friedberg, I.
10.1101/543223 — Posted: 2019-02-08 — Discussion: 2022-02-06  GigaScience
IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis
Chen, Y.-C., Suresh, A., Underbayev, C., Sun, C., Singh, K., Seifuddin, F., Wiestner, A., Pirooznia, M.
10.1101/596817 — Posted: 2019-04-03 — Discussion: 2022-02-06  GigaScience
Genetic demultiplexing of pooled single-cell RNA-sequencing samples in cancer facilitates effective experimental design
Weber, L. M., Hippen, A. A., Hickey, P. F., Berrett, K. C., Gertz, J., Doherty, J. A., Greene, C. S., Hicks, S. C.
10.1101/2020.11.06.371963 — Posted: 2020-11-07 — Discussion: 2022-02-06  GigaScience
FASTQuick: Rapid and comprehensive quality assessment of raw sequence reads
Zhang, F., Kang, H. M.
10.1101/2020.06.10.143768 — Posted: 2020-06-11 — Discussion: 2022-02-06  GigaScience

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