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432 Reviews — GigaScience — All Subjects

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Correcting for experiment-specific variability in expression compendia can remove underlying signals
Lee, A. J., Park, Y., Doing, G., Hogan, D. A., Greene, C. S.
10.1101/2020.05.03.066597 — Posted: 2020-05-03 — Discussion: 2022-01-24  GigaScience
Draft genome assemblies using sequencing reads from Oxford Nanopore Technology and Illumina platforms for four species of North American killifish from the Fundulus genus
Johnson, L. K., Sahasrabudhe, R., Gill, T., Roach, J. L., Froenicke, L., Brown, C. T., Whitehead, A.
10.1101/686246 — Posted: 2019-06-28 — Discussion: 2022-01-24  GigaScience
Rice Galaxy: an open resource for plant science
Juanillas, V. M. J., Dereeper, A., Beaume, N., Droc, G., Dizon, J., Mendoza, J. R., Perdon, J. P., Mansueto, L., Triplett, L., Lang, J., Zhou, G., Ratharanjan, K., Plale, B., Haga, J., Leach, J. E., Ruiz, M., Thomson, M., Alexandrov, N., Larmande, P., Kretzschmar, T., Mauleon, R. P.
10.1101/358754 — Posted: 2018-06-29 — Discussion: 2022-01-23  GigaScience
Evaluation of computational genotyping of Structural Variations for clinical diagnoses.
Chander, V., Gibbs, R. A., Sedlazeck, F. J.
10.1101/558247 — Posted: 2019-02-22 — Discussion: 2022-01-23  GigaScience
Laniakea: an open solution to provide Galaxy \"on-demand\" instances over heterogeneous cloud infrastructures.
Tangaro, M. A., Donvito, G., Antonacci, M., Chiara, M., Mandreoli, P., Pesole, G., Zambelli, F.
10.1101/472464 — Posted: 2018-11-19 — Discussion: 2022-01-23  GigaScience
Inferring putative ancient whole genome duplications in the 1000 Plants (1KP) initiative: access to gene family phylogenies and age distributions
Li, Z., Barker, M. S.
10.1101/735076 — Posted: 2019-08-14 — Discussion: 2022-01-23  GigaScience
CropMonitor: a scalable open-source experiment management system for distributed plant phenotyping and IoT-based crop management
Reynolds, D., Ball, J., Bauer, A., Griffiths, S., Zhou, J.
10.1101/451120 — Posted: 2018-10-26 — Discussion: 2022-01-23  GigaScience
Multifaceted Hi-C benchmarking: what makes a difference in chromosome-scale genome scaffolding?
Kadota, M., Nishimura, O., Miura, H., Tanaka, K., Hiratani, I., Kuraku, S.
10.1101/659623 — Posted: 2019-06-07 — Discussion: 2022-01-23  GigaScience
A chromosome-scale assembly of the major African malaria vector Anopheles funestus
Ghurye, J., Koren, S., Small, S. T., Redmond, S., Howell, P., Phillippy, A. M., Besansky, N. J.
10.1101/492777 — Posted: 2018-12-10 — Discussion: 2022-01-23  GigaScience
A Hybrid de novo Assembly of the Sea Pansy (Renilla muelleri) Genome
Jiang, J., Quattrini, A. M., Francis, W. R., Ryan, J. F., Rodriguez, E., McFadden, C. S.
10.1101/424614 — Posted: 2018-09-23 — Discussion: 2022-01-23  GigaScience

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