bioRxiv/medRxiv TRiP Review Activity

336 Reviews — GigaScience — All Subjects

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Deep Machine Learning provides state-of-the-art performance in image-based plant phenotyping
Michael P Pound, Alexandra J Burgess, Michael H Wilson, Jonathan A Atkinson, Marcus Griffiths, Aaron S Jackson, Adrian Bulat, Georgios Tzimiropoulos, Darren M Wells, Erik H Murchie, Tony P Pridmore, Andrew P French
10.1101/053033 — Posted: 2016-05-12 — Discussion: 2022-01-13  GigaScience
de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer
Benjamin Istace, Anne Friedrich, Léo d'Agata, Sébastien Faye, Emilie Payen, Odette Beluche, Claudia Caradec, Sabrina Davidas, Corinne Cruaud, Gianni Liti, Arnaud Lemainque, Stefan Engelen, Patrick Wincker, Joseph Schacherer, Jean-Marc Aury
10.1101/066613 — Posted: 2016-07-28 — Discussion: 2022-01-13  GigaScience
High precision registration between zebrafish brain atlases using symmetric diffeomorphic normalization
Marquart, G. D., Tabor, K. M., Horstick, E. J., Brown, M., Burgess, H. A.
10.1101/081000 — Posted: 2016-10-14 — Discussion: 2022-01-13  GigaScience
Construction of the third generation Zea mays haplotype map
Robert Bukowski, Xiaosen Guo, Yanli Lu, Cheng Zou, Bing He, Zhengqin Rong, Bo Wang, Dawen Xu, Bicheng Yang, Chuanxiao Xie, Longjiang Fan, Shibin Gao, Xun Xu, Gengyun Zhang, Yingrui Li, Yinping Jiao, John Doebley, Jeffrey Ross-Ibarra, Vince Buffalo, Cinta M Romay, Edward S Buckler, Yunbi Xu, Jinsheng Lai, Doreen Ware, Qi Sun
10.1101/026963 — Posted: 2015-09-16 — Discussion: 2022-01-13  GigaScience
A combined meta-barcoding and shotgun metagenomic analysis of spontaneous wine fermentation
Sternes, P. R., Lee, D., Kutyna, D. R., Borneman, A. R.
10.1101/098061 — Posted: 2017-01-10 — Discussion: 2022-01-13  GigaScience
Multi-Locus And Ultra-Long Amplicon Sequencing Approach To Study Microbial Diversity At Species Level Using The MinION™ Portable Nanopore Sequencer
Benitez-Paez, A., Sanz, Y.
10.1101/117143 — Posted: 2017-03-15 — Discussion: 2022-01-13  GigaScience
iCAVE: an open source tool for immersive 3D visualization of complex biomolecular interaction networks
Vaja Liluashvili, Selim Kalayci, Eugene Flouder, Manda Wilson, Aaron Gabow, Zeynep H. Gümüş
10.1101/061374 — Posted: 2016-06-29 — Discussion: 2022-01-13  GigaScience
MEBS, a software platform to evaluate large (meta)genomic collections according to their metabolic machinery: unraveling the sulfur cycle
De Anda, V., Zapata-Penasco, I., Poot Hernandez, A. C., Fruns, L. E., Contreras Moreira, B., Souza, V.
10.1101/191288 — Posted: 2017-09-20 — Discussion: 2022-01-13  GigaScience
Bio-Docklets: Virtualization Containers for Single-Step Execution of NGS Pipelines.
Kim, B., Ali, T. A., Lijeron, C., Afgan, E., Krampis, K.
10.1101/116962 — Posted: 2017-03-15 — Discussion: 2022-01-13  GigaScience
The Healthy Brain Network Serial Scanning Initiative: A resource for evaluating inter-individual differences and their reliabilities across scan conditions and sessions.
David O'Connor, Natan Vega Potler, Meagan Kovacs, Ting Xu, Lei Ai, John Pellman, Tamara Vanderwal, Lucas Parra, Samantha Cohen, Satrajit Ghosh, Jasmine Escalera, Natalie Grant-Villegas, Yael Osman, Anastasia Bui, Richard Cameron Craddock, Michael Peter Milham
10.1101/078881 — Posted: 2016-10-03 — Discussion: 2022-01-04  GigaScience

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