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442 Reviews — GigaScience — All Subjects

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Multi-Dimensional Machine Learning Approaches for Fruit Shape Recognition and Phenotyping in Strawberry
Feldmann, M. J., Hardigan, M. A., Famula, R. A., Lopez, C. M., Tabb, A., Cole, G. S., Knapp, S. J.
10.1101/736397 — Posted: 2019-08-15 — Discussion: 2022-01-24  GigaScience
Scientometric Trends for Coronaviruses and Other Emerging Viral Infections
Kagan, D., Moran-Gilad, J., Fire, M.
10.1101/2020.03.17.995795 — Posted: 2020-03-20 — Discussion: 2022-01-24  GigaScience
An improved pig reference genome sequence to enable pig genetics and genomics research
Warr, A., Affara, N., Aken, B., Beiki, H., Bickhart, D. M., Billis, K., Chow, W., Eory, L., Finlayson, H. A., Flicek, P., Giron, C. G., Griffin, D. K., Hall, R., Hannum, G., Hourlier, T., Howe, K., Hume, D. A., Izuogu, O., Kim, K., Koren, S., Liu, H., Manchanda, N., Martin, F. J., Nonneman, D. J., O'Connor, R. E., Phillippy, A. M., Rohrer, G. A., Rosen, B. D., Rund, L. A., Sargent, C. A., Schook, L. B., Schroeder, S. G., Schwartz, A. S., Skinner, B. M., Talbot, R., Tseng, E., Tuggle, C. K., Watson, M., Smith, T. P., Archibald, A. L.
10.1101/668921 — Posted: 2019-06-13 — Discussion: 2022-01-24  GigaScience
Community Standards for Open Cell Migration Data
Gonzalez-Beltran, A. N., Masuzzo, P., Ampe, C., Bakker, G.-J., Besson, S., Eibl, R. H., Friedl, P., Gunzer, M., Kittisopikul, M., Le Devedec, S. E., Leo, S., Moore, J., Paran, Y., Prilusky, J., Rocca-Serra, P., Roudot, P., Schuster, M., Sergeant, G., Stromblad, S., Swedlow, J. R., van Erp, M., Van Troys, M., Zaritsky, A., Sansone, S.-A., Martens, L.
10.1101/803064 — Posted: 2019-10-14 — Discussion: 2022-01-24  GigaScience
HTSlib - C library for reading/writing high-throughput sequencing data
Bonfield, J. K., Marshall, J., Danecek, P., Li, H., Ohan, V., Whitwham, A., Keane, T., Davies, R. M.
10.1101/2020.12.16.423064 — Posted: 2020-12-16 — Discussion: 2022-01-24  GigaScience
Draft genome assemblies using sequencing reads from Oxford Nanopore Technology and Illumina platforms for four species of North American killifish from the Fundulus genus
Johnson, L. K., Sahasrabudhe, R., Gill, T., Roach, J. L., Froenicke, L., Brown, C. T., Whitehead, A.
10.1101/686246 — Posted: 2019-06-28 — Discussion: 2022-01-24  GigaScience
ChronoRoot: High-throughput phenotyping by deep segmentation networks reveals novel temporal parameters of plant root system architecture
Gaggion, N., Ariel, F., Daric, V., Lambert, E., Legendre, S., Roule, T., Camoirano, A., Milone, D. H., Crespi, M., Blein, T., Ferrante, E.
10.1101/2020.10.27.350553 — Posted: 2020-10-27 — Discussion: 2022-01-24  GigaScience
Understanding the impact of preprocessing pipelines on neuroimaging cortical surface analyses
Bhagwat, N., Barry, A., Dickie, E. W., Brown, S. T., Devenyi, G. A., Hatano, K., DuPre, E., Dagher, A., Chakravarty, M. M., Greenwood, C. M. T., Misic, B., Kennedy, D. N., Poline, J.-B.
10.1101/2020.05.22.100180 — Posted: 2020-05-26 — Discussion: 2022-01-24  GigaScience
Global Analysis of Human mRNA Folding Disruptions in Synonymous Variants Demonstrates Significant Population Constraint
Gaither, J. B. S., Lammi, G. E., Li, J. L., Gordon, D. M., Kuck, H. C., Kelly, B. J., Fitch, J. R., White, P.
10.1101/712679 — Posted: 2019-07-24 — Discussion: 2022-01-24  GigaScience
The Gene-Rich Genome of the Scallop Pecten maximus
Kenny, N. J., McCarthy, S. A., Dudchenko, O., James, K., Betteridge, E., Corton, C., Dolucan, J., Mead, D., Oliver, K., Omer, A. D., Pelan, S., Ryan, Y., Sims, Y., Skelton, J., Smith, M., Torrance, J., Weisz, D., Wipat, A., Aiden, E. L., Howe, K., Williams, S. T.
10.1101/2020.01.08.887828 — Posted: 2020-01-09 — Discussion: 2022-01-24  GigaScience

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