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102 Reviews — GigaScience — Genomics

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A chromosome-level, haplotype-resolved genome assembly and annotation for the Eurasian minnow (Leuciscidae - Phoxinus phoxinus) provide evidence of haplotype diversity
Oriowo, T. O., Stange, M., Chrysostomakis, I., Martin, S., Brown, T., Winkler, S., Myers, E. W., Boehne, A., Kukowka, S.
10.1101/2023.11.30.569369 — Posted: 2023-12-01 — Discussion: 2025-02-10  GigaScience
De novo assembly and characterization of a highly degenerated ZW sex chromosome in the fish Megaleporinus macrocephalus
Borges, C. H. d. S., Utsunomia, R., Varani, A. M., Uliano da Silva, M., Guerra, L. V., Butzge, A. J., Gomez Agudelo, J. F., Manso, S., Freitas, M. V., Ariede, R. B., Mastrochirico-Filho, V. A., Penaloza, C., Barria, A., Porto-Foresti, F., Foresti, F., Hattori, R. S., Guiguen, Y., Houston, R. D., Hashimoto, D. T.
10.1101/2024.03.07.583869 — Posted: 2024-03-12 — Discussion: 2024-12-05  GigaScience
Genomic decoding of Theobroma grandiflorum (cupuassu) at chromosomal scale: Evolutionary insights for horticultural innovation
Alves, R. M., de Abreu, V. A. C., Oliveira, R. P., dos Anjos, J. V., Oliveira, M. d. M., Silva, S. R., Paschoal, A. R., Almeida, S. S., de Souza, P. A. F., Ferro, J. A., Miranda, V. F. O., Figueira, A., Domingues, D. S., Varani, A. M.
10.1101/2023.12.23.573069 — Posted: 2023-12-23 — Discussion: 2024-07-01  GigaScience
Exploring polymorphic interspecies structural variants in Eucalyptus: Unravelling Their Role in Reproductive Isolation and Adaptive Divergence.
Ferguson, S., Jones, A., Murray, K. D., Andrew, R. L., Bothwell, H., Schwessinger, B., Borevitz, J. O.
10.1101/2023.10.20.563207 — Posted: 2023-10-21 — Discussion: 2024-07-01  GigaScience
Korea4K: whole genome sequences of 4,157 Koreans with 107 phenotypes derived from extensive health check-ups
Jeon, S., Choi, H., Jeon, Y., Choi, W.-H., Choi, H., An, K., Ryu, H., Bhak, J., Lee, H., Kwon, Y., Ha, S., Kim, Y. J., Blazyte, A., Kim, C., Kim, Y., Kang, Y., Woo, Y. J., Lee, C., Seo, J., Bolser, D., Biro, O., Shin, E.-S., Kim, B. C., Kim, S.-Y., Park, J.-H., Jeon, J., Jung, D., Lee, S., Bhak, J.
10.1101/2022.12.25.521908 — Posted: 2022-12-26 — Discussion: 2024-05-13  GigaScience
A high-quality pseudo-phased genome for Melaleuca quinquenervia shows allelic diversity of NLR-type resistance genes
Chen, S. H., Martino, A. M., Luo, Z., Schwessinger, B., Jones, A., Tolessa, T., Bragg, J. G., Tobias, P. A., Edwards, R. J.
10.1101/2023.04.27.538497 — Posted: 2023-04-28 — Discussion: 2024-01-22  GigaScience
Haplogenomes of Eucalyptus urophylla and E. grandis
Lötter, A., Duong, T., Candotti, J., Mizrachi, E., Wegrzyn, J. L., Myburg, A. A.
10.1101/2022.08.17.501336 — Posted: 2022-08-18 — Discussion: 2023-09-04  GigaScience
A new haplotype-resolved turkey genome to enable turkey genetics and genomics research
Barros, C. P., Derks, M. F., Mohr, J., Wood, B., Crooijmans, R. P., Megens, H.-J., Bink, M. C., Groenen, M. A.
10.1101/2022.08.18.504375 — Posted: 2022-08-18 — Discussion: 2023-08-21  GigaScience
The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology
Ballard, J. W. O., Field, M. A., Edwards, R. J., Wilson, L. A. B., Koungoulos, L. G., Rosen, B. R., Chernoff, B., Dudchenko, O., Omer, A., Keilwagen, J., Skvortsova, K., Bogdanovic, O., Chan, E., Zammit, R., Hayes, V., Aiden, E. L.
10.1101/2023.01.26.525801 — Posted: 2023-01-27 — Discussion: 2023-04-10  GigaScience
Whole-genome sequencing of Chinese native goat offers biological insights into cashmere fiber formation
Han, H., Yang, M.-M., Jiang, D., Zhang, X.-J., Wei, Q., Chen, T., Wang, Q.-J., Yang, C.-Y., Wulan, B., Zhang, T.-T., Gang, G., Mengke, D., LI, B., Deng, W.-D., Miao, Z.-P., Wang, R., Zhang, Q.-F., Li, L., CHao, S.-Y., Fang, M., Li, Y.
10.1101/2021.11.06.467539 — Posted: 2021-11-06 — Discussion: 2023-03-24  GigaScience

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