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84 Reviews — GigaScience — Genomics

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Construction of a new chromosome-scale, long-read reference genome assembly of the Syrian hamster, Mesocricetus auratus
Harris, R. A., Raveendran, M., Lyfoung, D. T., Sedlazeck, F. J., Mahmoud, M., Prall, T., Karl, J., Doddapaneni, H., Meng, Q., Han, Y., Muzny, D., Wiseman, R. W., O'Connor, D. H., Rogers, J.
10.1101/2021.07.05.451071 — Posted: 2021-07-05 — Discussion: 2023-02-15  GigaScience
Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves higher resolution for research and breeding
Aury, J.-M., Engelen, S., Istace, B., Monat, C., Lasserre-Zuber, P., Belser, C., Cruaud, C., Rimbert, H., Leroy, P., Arribat, S., Dufau, I., Bellec, A., Grimbichler, D., Papon, N., Paux, E., Ranoux, M., Alberti, A., Wincker, P., Choulet, F.
10.1101/2021.08.24.457458 — Posted: 2021-08-24 — Discussion: 2022-11-27  GigaScience
The haplotype-resolved chromosome pairs and transcriptome of a heterozygous diploid African cassava cultivar
Qi, W., Lim, Y.-W., Patrignani, A., Schlaepfer, P., Bratus-Neuenschwander, A., Grueter, S., Chanez, C., Rodde, N., Prat, E., Vautrin, S., Fustier, M.-A., Pratas, D., Schlapbach, R., Gruissem, W.
10.1101/2021.11.16.468774 — Posted: 2021-11-19 — Discussion: 2022-04-08  GigaScience
Assessing species coverage and assembly quality of rapidly accumulating sequenced genomes
Feron, R., Waterhouse, R. M.
10.1101/2021.10.15.464561 — Posted: 2021-10-16 — Discussion: 2022-03-14  GigaScience
From partial to whole genome imputation of SARS-CoV-2 for epidemiological surveillance
Ortuno, F. M., Loucera, C., Casimiro-Soriguer, C. S., Lepe, J. A., Camacho Martinez, P., Merino Diaz, L., Chueca, N., de Salazar, A., Garcia, F., Perez-Florido, J., Dopazo, J.
10.1101/2021.04.13.439668 — Posted: 2021-04-13 — Discussion: 2022-03-14  GigaScience
A high-quality Genome and Comparison of Short versus Long Read Transcriptome of the Palaearctic duck Aythya fuligula (Tufted Duck)
Mueller, R. C., Ellström, P., Howe, K., Uliano-Silva, M., Kuo, R. I., Miedzinska, K., Warr, A., Fedrigo, O., Haase, B., Mountcastle, J., Chow, W., Torrance, J., Wood, J., Järhult, J. D., Naguib, M. M., Olsen, B., Jarvis, E. D., Smith, J., Eöry, L., Kraus, R. H.
10.1101/2021.02.24.432697 — Posted: 2021-02-25 — Discussion: 2022-03-14  GigaScience
Improved chromosome level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) based on SMRT Sequencing and linkage map.
Blande, D., Smolander, O.-P., Ahola, V., Rastas, P., Tanskanen, J., Kammonen, J. I., Oostra, V., Pellegrini, L., Ikonen, S., Dallas, T., DiLeo, M. F., Duplouy, A., Duru, I. C., Halimaa, P., Kahilainen, A., Kuwar, S. S., Karenlampi, S. O., Lafuente, E., Luo, S., Makkonen, J., Nair, A., Celorio-Mancera, M. d. l. P., Pennanen, V., Ruokolainen, A., Sundell, T., Tervahauta, A. I., Twort, V., van Bergen, E., Osterman-Udd, J., Paulin, L., Frilander, M. J., Auvinen, P., Saastamoinen, M.
10.1101/2020.11.03.364950 — Posted: 2020-11-04 — Discussion: 2022-03-14  GigaScience
Fully resolved assembly of Cryptosporidium parvum
Menon, V. K., Okhuysen, P. C., Chappell, C., Mahmoud, M., Meng, Q., Vee, V., Doddapaneni, H., Han, Y., Salvi, S., Bhamidipati, S., Kottapalli, K., Weissenberger, G., Shen, H., Ross, M. C., Hoffman, K. L., Cregeen, S. J., Muzny, D. M., Metcalf, G. A., Gibbs, R. A., Petrosino, J. F., Sedlazeck, F. J.
10.1101/2021.07.07.451495 — Posted: 2021-07-08 — Discussion: 2022-03-14  GigaScience
Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information
Kim, H.-S., Jeon, S., Kim, C., Kim, Y. K., Cho, Y. S., Blazyte, A., Manica, A., Lee, S., Bhak, J.
10.1101/674804 — Posted: 2019-06-19 — Discussion: 2022-03-14  GigaScience
HOMINID: A framework for identifying associations between host genetic variation and microbiome composition
Lynch, J., Tang, K., Sands, J., Sands, M., Tang, E., Mukherjee, S., Knights, D., Blekhman, R.
10.1101/081323 — Posted: 2016-10-17 — Discussion: 2022-03-14  GigaScience

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