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456 Reviews — GigaScience — All Subjects

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Smash++: an alignment-free and memory-efficient tool to find genomic rearrangements
Hosseini, M., Pratas, D., Morgenstern, B., Pinho, A. J.
10.1101/2019.12.23.887349 — Posted: 2019-12-25 — Discussion: 2022-01-24  GigaScience
High-quality chromosome-scale assembly of the walnut (Juglans regia L) reference genome
Marrano, A., Britton, M., Zaini, P. A., Zimin, A., Workman, R., Puiu, D., Bianco, L., Di Pierro, E. A., Allen, B., Chakraborty, S., Troggio, M., Leslie, C., Timp, W., Dendekar, A., Salzberg, S., Neale, D. B.
10.1101/809798 — Posted: 2019-10-17 — Discussion: 2022-01-24  GigaScience
Sequencing smart: De novo sequencing and assembly approaches for non-model mammals.
Etherington, G. J., Heavens, D., Baker, D., Lister, A., McNelly, R., Garcia Accinelli, G., Clavijo, B. J., Macaulay, I., Haerty, W., Di Palma, F.
10.1101/723890 — Posted: 2019-08-05 — Discussion: 2022-01-24  GigaScience
Community composition and development of the post-weaning piglet gut microbiome
Gaio, D., DeMaere, M. Z., Anantanawat, K., Eamens, G. J., Liu, M., Zingali, T., Falconer, L., Chapman, T. A., Djordjevic, S. P., Darling, A. E.
10.1101/2020.07.20.211326 — Posted: 2020-07-20 — Discussion: 2022-01-24  GigaScience
Reduced chromatin accessibility underlies gene expression differences in homologous chromosome arms of hexaploid wheat and diploid Aegilops tauschii
Lu, F.-H., McKenzie, N., Gardiner, L.-J., Luo, M., Hall, A., Bevan, M. W.
10.1101/571133 — Posted: 2019-03-07 — Discussion: 2022-01-24  GigaScience
SoupX removes ambient RNA contamination from droplet based single cell RNA sequencing data
Young, M. D., Behjati, S.
10.1101/303727 — Posted: 2018-04-20 — Discussion: 2022-01-24  GigaScience
MB-GAN: Microbiome Simulation via Generative Adversarial Network
Rong, R., Jiang, S., Xu, L., Xiao, G., Xie, Y., Liu, D. J., Li, Q., Zhan, X.
10.1101/863977 — Posted: 2019-12-04 — Discussion: 2022-01-24  GigaScience
Building the Mega Single Cell Transcriptome Ocular Meta-Atlas
Swamy, V. S., Fufa, T. D., Hufnagel, R. B., McGaughey, D. M.
10.1101/2021.03.26.437190 — Posted: 2021-03-28 — Discussion: 2022-01-24  GigaScience
A haplotype-resolved, de novo genome assembly for the wood tiger moth (Arctia plantaginis) through trio binning
Yen, E. C., McCarthy, S. A., Galarza, J. A., Generalovic, T. N., Pelan, S., Nguyen, P., Meier, J. I., Warren, I. A., Mappes, J., Durbin, R., Jiggins, C. D.
10.1101/2020.02.28.970020 — Posted: 2020-03-02 — Discussion: 2022-01-24  GigaScience
Imputing missing RNA-seq data from DNA methylation by using transfer learning based-deep neural network
Zhou, X., Chai, H., Zhao, H., Luo, C.-H., Yang, Y.
10.1101/803692 — Posted: 2019-10-13 — Discussion: 2022-01-24  GigaScience

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