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363 Reviews — GigaScience — All Subjects

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An improved pig reference genome sequence to enable pig genetics and genomics research
Warr, A., Affara, N., Aken, B., Beiki, H., Bickhart, D. M., Billis, K., Chow, W., Eory, L., Finlayson, H. A., Flicek, P., Giron, C. G., Griffin, D. K., Hall, R., Hannum, G., Hourlier, T., Howe, K., Hume, D. A., Izuogu, O., Kim, K., Koren, S., Liu, H., Manchanda, N., Martin, F. J., Nonneman, D. J., O'Connor, R. E., Phillippy, A. M., Rohrer, G. A., Rosen, B. D., Rund, L. A., Sargent, C. A., Schook, L. B., Schroeder, S. G., Schwartz, A. S., Skinner, B. M., Talbot, R., Tseng, E., Tuggle, C. K., Watson, M., Smith, T. P., Archibald, A. L.
10.1101/668921 — Posted: 2019-06-13 — Discussion: 2022-01-24  GigaScience
A chromosome-level genome assembly for the Pacific oyster (Crassostrea gigas)
Penaloza, C., Gutierrez, A. P., Eory, L., Wang, S., Guo, X., Archibald, A. L., Bean, T. P., Houston, R. D.
10.1101/2020.09.25.313494 — Posted: 2020-09-25 — Discussion: 2022-01-24  GigaScience
Fluorescence Microscopy Datasets for Training Deep Neural Networks
Hagen, G. M., Bendesky, J., Machado, R., Nguyen, T.-A., Kumar, T., Ventura, J.
10.1101/2020.06.17.158097 — Posted: 2020-06-18 — Discussion: 2022-01-24  GigaScience
Multi-Dimensional Machine Learning Approaches for Fruit Shape Recognition and Phenotyping in Strawberry
Feldmann, M. J., Hardigan, M. A., Famula, R. A., Lopez, C. M., Tabb, A., Cole, G. S., Knapp, S. J.
10.1101/736397 — Posted: 2019-08-15 — Discussion: 2022-01-24  GigaScience
Efficiently processing amplicon sequencing data for microbial ecology with dadasnake, a DADA2 implementation in Snakemake
Weissbecker, C., Schnabel, B., Heintz-Buschart, A.
10.1101/2020.05.17.095679 — Posted: 2020-05-19 — Discussion: 2022-01-24  GigaScience
Community Standards for Open Cell Migration Data
Gonzalez-Beltran, A. N., Masuzzo, P., Ampe, C., Bakker, G.-J., Besson, S., Eibl, R. H., Friedl, P., Gunzer, M., Kittisopikul, M., Le Devedec, S. E., Leo, S., Moore, J., Paran, Y., Prilusky, J., Rocca-Serra, P., Roudot, P., Schuster, M., Sergeant, G., Stromblad, S., Swedlow, J. R., van Erp, M., Van Troys, M., Zaritsky, A., Sansone, S.-A., Martens, L.
10.1101/803064 — Posted: 2019-10-14 — Discussion: 2022-01-24  GigaScience
Draft genome assemblies using sequencing reads from Oxford Nanopore Technology and Illumina platforms for four species of North American killifish from the Fundulus genus
Johnson, L. K., Sahasrabudhe, R., Gill, T., Roach, J. L., Froenicke, L., Brown, C. T., Whitehead, A.
10.1101/686246 — Posted: 2019-06-28 — Discussion: 2022-01-24  GigaScience
Chromatin conformation capture (Hi-C) sequencing of patient-derived xenografts: analysis guidelines
Dozmorov, M. G., Tyc, K. M., Sheffield, N. C., Boyd, D. C., Olex, A. L., Reed, J., Harrell, J. C.
10.1101/2020.10.17.343814 — Posted: 2020-10-17 — Discussion: 2022-01-24  GigaScience
Long-reads assembly of the Brassica napus reference genome, Darmor-bzh
Rousseau-Gueutin, M., Belser, C., Da Silva, C., Richard, G., Istace, B., Cruaud, C., Falentin, C., Boideau, F., Boutte, J., Delourme, R., Deniot, G., Engelen, S., Ferreira de Carvalho, J., Lemainque, A., Maillet, L., Morice, J., Wincker, P., Denoeud, F., Chevre, A.-M., Aury, J.-M.
10.1101/2020.07.22.215749 — Posted: 2020-07-22 — Discussion: 2022-01-24  GigaScience
Tool recommender system in Galaxy using deep learning
Kumar, A., Gruening, B., Backofen, R.
10.1101/838599 — Posted: 2019-11-12 — Discussion: 2022-01-24  GigaScience

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