bioRxiv/medRxiv TRiP Review Activity

394 Reviews — GigaScience — All Subjects

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The germline mutational process in rhesus macaque and its implications for phylogenetic dating
Bergeron, L. A., Besenbacher, S., Bakker, J., Zheng, J., Li, P., Pacheco, G., Sinding, M.-H. S., Kamilari, M., Gilbert, M. T. P., Schierup, M. H., Zhang, G.
10.1101/2020.06.22.164178 — Posted: 2020-06-23 — Discussion: 2022-01-24  GigaScience
A web-server framework to explore and visualize large genomic variation data in lab and its applications to wheat and its progenitors
Wang, W., Wang, Z., Li, X., Ni, Z., Hu, Z., Xin, M., Peng, H., Yao, Y., Sun, Q., Guo, W.
10.1101/626705 — Posted: 2019-05-16 — Discussion: 2022-01-24  GigaScience
Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacbio Sequel II system and ultralong reads of Oxford Nanopore
Lang, D., Zhang, S., Ren, P., Liang, F., Sun, Z., Meng, G., Tan, Y., Hu, J., Li, X., Lai, Q., Han, L., Wang, D., Hu, F., Wang, W., Liu, S.
10.1101/2020.02.13.948489 — Posted: 2020-02-14 — Discussion: 2022-01-24  GigaScience
ChronoRoot: High-throughput phenotyping by deep segmentation networks reveals novel temporal parameters of plant root system architecture
Gaggion, N., Ariel, F., Daric, V., Lambert, E., Legendre, S., Roule, T., Camoirano, A., Milone, D. H., Crespi, M., Blein, T., Ferrante, E.
10.1101/2020.10.27.350553 — Posted: 2020-10-27 — Discussion: 2022-01-24  GigaScience
HTSlib - C library for reading/writing high-throughput sequencing data
Bonfield, J. K., Marshall, J., Danecek, P., Li, H., Ohan, V., Whitwham, A., Keane, T., Davies, R. M.
10.1101/2020.12.16.423064 — Posted: 2020-12-16 — Discussion: 2022-01-24  GigaScience
parSMURF, a High Performance Computing tool for the genome-wide detection of pathogenic variants
Petrini, A., Mesiti, M., Schubach, M., Frasca, M., Danis, D., Re, M., Grossi, G., Cappelletti, L., Castrignano', T., Robinson, P. N., Valentini, G.
10.1101/2020.03.18.994079 — Posted: 2020-03-20 — Discussion: 2022-01-24  GigaScience
EWAS-Galaxy: a tools suite for population epigenetics integrated into Galaxy
Murat, K., Gruning, B., Poterlowicz, P. W., Westgate, G., Tobin, D. J., Poterlowicz, K.
10.1101/553784 — Posted: 2019-02-19 — Discussion: 2022-01-24  GigaScience
CRISPRCasIdentifier: Machine learning for accurate identification and classification of CRISPR-Cas systems
Padilha, V. A., Alkhnbashi, O. S., Shah, S. A., de Carvalho, A. C. P. L. F., Backofen, R.
10.1101/817619 — Posted: 2019-10-31 — Discussion: 2022-01-24  GigaScience
BiG-SLiCE: A Highly Scalable Tool Maps the Diversity of 1.2 Million Biosynthetic Gene Clusters
Kautsar, S. A., van der Hooft, J. J. J., de Ridder, D., Medema, M. H.
10.1101/2020.08.17.240838 — Posted: 2020-08-18 — Discussion: 2022-01-24  GigaScience
Understanding the impact of preprocessing pipelines on neuroimaging cortical surface analyses
Bhagwat, N., Barry, A., Dickie, E. W., Brown, S. T., Devenyi, G. A., Hatano, K., DuPre, E., Dagher, A., Chakravarty, M. M., Greenwood, C. M. T., Misic, B., Kennedy, D. N., Poline, J.-B.
10.1101/2020.05.22.100180 — Posted: 2020-05-26 — Discussion: 2022-01-24  GigaScience

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