bioRxiv/medRxiv TRiP Review Activity

477 Reviews — All Partners — Bioinformatics

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Strategies and Techniques for Quality Control and Semantic Enrichment with Multimodal Data: A Case Study in Colorectal Cancer with eHDPrep
Toner, T., Miller, P., Forster, T., Coleman, H., Overton, I. M.
10.1101/2022.09.07.506953 — Posted: 2022-09-09 — Discussion: 2023-06-19  GigaScience
TF-Prioritizer: a java pipeline to prioritize condition-specific transcription factors
Hoffmann, M., Trummer, N., Jankowski, J., Lee, H. K., Willruth, L.-L., Yuan, K., Lazareva, O., Baumgarten, N., Schmidt, F., Baumbach, J., Schulz, M. H., Blumenthal, D. B., Hennighausen, L., List, M.
10.1101/2022.10.19.512881 — Posted: 2022-10-21 — Discussion: 2023-06-19  GigaScience
A workflow reproducibility scale for automatic validation of biological interpretation results.
Suetake, H., Fukusato, T., Igarashi, T., Ohta, T.
10.1101/2022.10.11.511695 — Posted: 2022-10-13 — Discussion: 2023-06-19  GigaScience
Exploratory Meta-Analysis of Hypoxic Transcriptomes Using a Precise Transcript Reference Sequence Set
Ono, Y., Bono, H.
10.1101/2022.05.01.489280 — Posted: 2022-05-01 — Discussion: 2023-05-26  EMBO Press
LimoRhyde2: genomic analysis of biological rhythms based on effect sizes
Obodo, D., Outland, E. H., Hughey, J. J.
10.1101/2023.02.02.526897 — Posted: 2023-02-03 — Discussion: 2023-05-26  Review Commons
Gapless provides combined scaffolding, gap filling and assembly correction with long reads
Schmeing, S., Robinson, M. D.
10.1101/2022.03.08.483466 — Posted: 2022-03-09 — Discussion: 2023-05-26  EMBO Press
Transcription factor expression is the main determinant of variability in gene co-activity
van Duin, L., Krautz, R., Rennie, S., Andersson, R.
10.1101/2022.10.11.511770 — Posted: 2022-10-14 — Discussion: 2023-05-24  EMBO Press
Expanding the stdpopsim species catalog, and lessons learned forrealistic genome simulations
Lauterbur, M. E., Cavassim, M. I. A., Gladstein, A. L., Gower, G., Pope, N. S., Tsambos, G., Adrion, J., Belsare, S., Biddanda, A., Caudill, V., Cury, J., Echevarria, I., Haller, B. C., Hasan, A. R., Huang, X., Iasi, L. N. M., Noskova, E., Obsteter, J., Pavinato, V. A. C., Pearson, A., Peede, D., Perez, M. F., Rodrigues, M. F., Smith, C. C. R., Spence, J. P., Teterina, A., Tittes, S., Unneberg, P., Vazquez, J. M., Waples, R. K., Wohns, A. W., Wong, Y., Baumdicker, F., Cartwright, R. A., Gorjanc, G., Gutenkunst, R. N., Kelleher, J., Kern, A. D., Ragsdale, A. P., Ralph, P. L., Schrider, D. R., G
10.1101/2022.10.29.514266 — Posted: 2022-10-31 — Discussion: 2023-05-22  eLife
The value of genotype-specific reference for transcriptome analyses
Guo, W., Coulter, M., Waugh, R., Zhang, R.
10.1101/2021.09.14.460213 — Posted: 2021-09-15 — Discussion: 2023-05-14  EMBO Press
DivBrowse - interactive visualization and exploratory data analysis of variant call matrices
König, P., Beier, S., Mascher, M., Stein, N., Lange, M., Scholz, U.
10.1101/2022.09.22.509016 — Posted: 2022-09-23 — Discussion: 2023-05-02  GigaScience

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