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424 Reviews — GigaScience — All Subjects

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Association Mapping Across a Multitude of Traits Collected in Diverse Environments Identifies Pleiotropic Loci in Maize.
Mural, R. V., Sun, G., Grzybowski, M., Tross, M. C., Jin, H., Smith, C., Newton, L., Andorf, C. M., Woodhouse, M. R., Thompson, A. M., Sigmon, B. V., Schnable, J. C.
10.1101/2022.02.25.480753 — Posted: 2022-02-25 — Discussion: 2023-02-17  GigaScience
Disease classification for whole blood DNA methylation: meta-analysis, missing values imputation, and XAI
Kalyakulina, A., Yusipov, I., Bacalini, M. G., Franceschi, C., Vedunova, M., Ivanchenko, M.
10.1101/2022.05.10.491404 — Posted: 2022-05-11 — Discussion: 2023-02-17  GigaScience
A curated human cellular microRNAome based on 196 primary cell types
Patil, A. H., Baran, A., Brehm, Z., McCall, M. N., Halushka, M. K.
10.1101/2022.05.16.492160 — Posted: 2022-05-17 — Discussion: 2023-02-17  GigaScience
Karyon: a computational framework for the diagnosis of hybrids, aneuploids, and other non-standard architectures in genome assemblies.
Naranjo-Ortiz, M. A., Molina, M., Mixao, V., Gabaldon, T.
10.1101/2021.05.23.445324 — Posted: 2021-05-23 — Discussion: 2023-02-17  GigaScience
BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data.
Moraga, C., Sanchez, E., Galvao Ferrarini, M., Gutierrez, R. A., Vidal, E. A., Sagot, M.-F.
10.1101/2020.08.07.240689 — Posted: 2020-08-07 — Discussion: 2023-02-17  GigaScience
ChemChaste: Simulating spatially inhomogenous biochemical reaction-diffusion systems for modelling cell-environment feedbacks
Johnson, C. G. M., Fletcher, A. G., soyer, o. s.
10.1101/2021.10.21.465304 — Posted: 2021-10-22 — Discussion: 2023-02-15  GigaScience
Spacemake: processing and analysis of large-scale spatial transcriptomics data
Sztanka-Toth, T. R., Jens, M., Karaiskos, N., Rajewsky, N.
10.1101/2021.11.07.467598 — Posted: 2021-11-08 — Discussion: 2023-02-15  GigaScience
Profiling the baseline performance and limits of machine learning models for adaptive immune receptor repertoire classification
Kanduri, C., Pavlovic, M., Scheffer, L., Motwani, K., Chernigovskaya, M., Greiff, V., Sandve, G. K.
10.1101/2021.05.23.445346 — Posted: 2021-05-23 — Discussion: 2023-02-15  GigaScience
Construction of a new chromosome-scale, long-read reference genome assembly of the Syrian hamster, Mesocricetus auratus
Harris, R. A., Raveendran, M., Lyfoung, D. T., Sedlazeck, F. J., Mahmoud, M., Prall, T., Karl, J., Doddapaneni, H., Meng, Q., Han, Y., Muzny, D., Wiseman, R. W., O'Connor, D. H., Rogers, J.
10.1101/2021.07.05.451071 — Posted: 2021-07-05 — Discussion: 2023-02-15  GigaScience
Loop detection using Hi-C data with HiCExplorer
Wolff, J., Backofen, R., Gruening, B.
10.1101/2020.03.05.979096 — Posted: 2020-03-06 — Discussion: 2023-02-15  GigaScience

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