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359 Reviews — GigaScience — All Subjects

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Standardized genome-wide function prediction enables comparative functional genomics in plants: a new application area for Gene Ontologies
Fattel, L., Psaroudakis, D., Yanarella, C., Chiteri, K., Dostalik, H. A., Joshi, P., Starr, D. C., Vu, H., Wimalanathan, K., Lawrence-Dill, C. J.
10.1101/2021.04.25.441366 — Posted: 2021-04-28 — Discussion: 2022-08-09  GigaScience
Improving the annotation of the Heterorhabditis bacteriophora genome
McLean, F., Berger, D., Laetsch, D., Schwartz, H., Blaxter, M.
10.1101/225904 — Posted: 2017-11-30 — Discussion: 2022-08-09  GigaScience
A practical tool for Maximal Information Coefficient analysis
Albanese, D., Riccadonna, S., Donati, C., Franceschi, P.
10.1101/215855 — Posted: 2017-11-07 — Discussion: 2022-06-23  GigaScience
Predicting plant biomass accumulation from image-derived parameters
Dijun Chen, Rongli Shi, Jean-Michel Pape, Christian Klukas
10.1101/046656 — Posted: 2016-03-31 — Discussion: 2022-06-23  GigaScience
The haplotype-resolved chromosome pairs and transcriptome of a heterozygous diploid African cassava cultivar
Qi, W., Lim, Y.-W., Patrignani, A., Schlaepfer, P., Bratus-Neuenschwander, A., Grueter, S., Chanez, C., Rodde, N., Prat, E., Vautrin, S., Fustier, M.-A., Pratas, D., Schlapbach, R., Gruissem, W.
10.1101/2021.11.16.468774 — Posted: 2021-11-19 — Discussion: 2022-04-08  GigaScience
GuideMaker: Software to design CRISPR-Cas guide RNA pools in non-model genomes
Poudel, R., Trujillo Rodriguez, L., Reisch, C. R., Rivers, A. R.
10.1101/2021.06.28.450164 — Posted: 2021-06-29 — Discussion: 2022-04-08  GigaScience
Triku: a feature selection method based on nearest neighbors for single-cell data
Ascension, A. M., Ibanez-Sole, O., Inza, I., Izeta, A., Arauzo-Bravo, M. J.
10.1101/2021.02.12.430764 — Posted: 2021-02-16 — Discussion: 2022-03-20  GigaScience
To assemble or not to resemble -- A validated Comparative Metatranscriptomics Workflow (CoMW)
Anwar, M. Z., Lanzen, A., Bang-Andreasen, T., Jacobsen, C. S.
10.1101/642348 — Posted: 2019-05-27 — Discussion: 2022-03-14  GigaScience
HOMINID: A framework for identifying associations between host genetic variation and microbiome composition
Lynch, J., Tang, K., Sands, J., Sands, M., Tang, E., Mukherjee, S., Knights, D., Blekhman, R.
10.1101/081323 — Posted: 2016-10-17 — Discussion: 2022-03-14  GigaScience
A high-throughput multiplexing and selection strategy to complete bacterial genomes
Arredondo-Alonso, S., Pöntinen, A. K., Cleon, F., Gladstone, R. A., Schürch, A. C., Johnsen, P. J., Samuelsen, O., Corander, J.
10.1101/2021.06.14.448320 — Posted: 2021-06-14 — Discussion: 2022-03-14  GigaScience

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