bioRxiv/medRxiv TRiP Review Activity

394 Reviews — GigaScience — All Subjects

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3D-Beacons: Decreasing the gap between protein sequences and structures through a federated network of protein structure data resources
Varadi, M., Nair, S. S., Sillitoe, I., Tauriello, G., Anyango, S., Bienert, S., Borges, C., Deshpande, M., Green, T., Hatos, A., Hegedus, T., Hekkelman, M. L., Joosten, R., Jumper, J., Laydon, A., Molodenskiy, D., Piovesan, D., Salladini, E., Salzberg, S. L., Sommer, M. J., Steinegger, M., Suhajda, E., Svergun, D., Tenorio-Ku, L., Tosatto, S., Tunyasuvunakool, K., Waterhouse, A. M., Zidek, A., Hassabis, D., Schwede, T., Orengo, C., Velankar, S.
10.1101/2022.08.01.501973 — Posted: 2022-08-03 — Discussion: 2023-03-24  GigaScience
Whole-genome sequencing of Chinese native goat offers biological insights into cashmere fiber formation
Han, H., Yang, M.-M., Jiang, D., Zhang, X.-J., Wei, Q., Chen, T., Wang, Q.-J., Yang, C.-Y., Wulan, B., Zhang, T.-T., Gang, G., Mengke, D., LI, B., Deng, W.-D., Miao, Z.-P., Wang, R., Zhang, Q.-F., Li, L., CHao, S.-Y., Fang, M., Li, Y.
10.1101/2021.11.06.467539 — Posted: 2021-11-06 — Discussion: 2023-03-24  GigaScience
Utilizing artificial intelligence system to build the digital structural proteome of reef-building corals
Zhu, Y., Liao, X., Han, T., Chen, J.- Y., He, C., Lu, Z.
10.1101/2022.06.27.497859 — Posted: 2022-06-30 — Discussion: 2023-03-24  GigaScience
Making Common Fund data more Findable: Catalyzing a Data Ecosystem
Charbonneau, A. L., Brady, A., Brown, C. T., Sansone, S.-A., Ma'ayan, A., Wagner, R., Carter, R., Harris, R. M., Gingrich, A., Lim, M. C. W., Munro, J. B., Clarke, D. J. B., Creasy, H. H., Rocca-Serra, P., Jeon, M., Liming, R. L., Schuler, R. E., Romano, C., Chard, K., Giglio, M., Nadendla, S., Hodges, T. K., Mandal, M., Canchi, S., Waldrop, A., White, O.
10.1101/2021.11.05.467504 — Posted: 2021-11-08 — Discussion: 2023-03-24  GigaScience
TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles
Sarwal, V., Brito, J., Mangul, S., Koslicki, D. J.
10.1101/2022.04.28.489926 — Posted: 2022-04-29 — Discussion: 2023-03-05  GigaScience
Contrast Subgraphs Allow Comparing Homogeneous and Heterogeneous Networks Derived from Omics Data
Lanciano, T., Savino, A., Porcu, F., Cittaro, D., Bonchi, F., Provero, P.
10.1101/2022.07.26.501547 — Posted: 2022-07-27 — Discussion: 2023-03-05  GigaScience
Workflow sharing with automated metadata validation and test execution to improve the reusability of published workflows
Suetake, H., Fukusato, T., Igarashi, T., Ohta, T.
10.1101/2022.07.08.499265 — Posted: 2022-07-10 — Discussion: 2023-03-05  GigaScience
A molecular phenotypic map of Malignant Pleural Mesothelioma
Di Genova, A., Mangiante, L., Sexton-Oates, A., Voegele, C., Fernandez-Cuesta, L., Alcala, N., Foll, M.
10.1101/2022.07.06.499003 — Posted: 2022-07-08 — Discussion: 2023-03-04  GigaScience
scShapes: A statistical framework for identifying distribution shapes in single-cell RNA-sequencing data
Dharmaratne, M., Kulkarni, A. S., Taherian Fard, A., Mar, J. C.
10.1101/2022.02.13.480299 — Posted: 2022-02-15 — Discussion: 2023-03-04  GigaScience
A Chromosome-level Assembly of the Japanese Eel Genome, Insights into Gene Duplication and Chromosomal Reorganization
WANG, H., WAN, H. T., WU, B., JIAN, J., NG, A. H., CHUNG, C. Y.-L., CHOW, E. Y.-C., ZHANG, J., WONG, A. O., LAI, K. P., CHAN, T. F., Zhang, E. L., WONG, C. K.-C.
10.1101/2022.06.28.497880 — Posted: 2022-07-01 — Discussion: 2023-03-04  GigaScience

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