bioRxiv/medRxiv TRiP Review Activity

359 Reviews — GigaScience — All Subjects

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A chromosome-level reference genome of Ensete glaucum gives insight into diversity, chromosomal and repetitive sequence evolution in the Musaceae
Wang, Z., Rouard, M., Biswas, M. K., Droc, G., Cui, D., Roux, N., Baurens, F.-C., Ge, X.-J., Schwarzacher, T., Heslop-Harrison, J., Liu, Q.
10.1101/2021.11.23.469474 — Posted: 2021-11-24 — Discussion: 2023-02-15  GigaScience
ChemChaste: Simulating spatially inhomogenous biochemical reaction-diffusion systems for modelling cell-environment feedbacks
Johnson, C. G. M., Fletcher, A. G., soyer, o. s.
10.1101/2021.10.21.465304 — Posted: 2021-10-22 — Discussion: 2023-02-15  GigaScience
Spacemake: processing and analysis of large-scale spatial transcriptomics data
Sztanka-Toth, T. R., Jens, M., Karaiskos, N., Rajewsky, N.
10.1101/2021.11.07.467598 — Posted: 2021-11-08 — Discussion: 2023-02-15  GigaScience
Profiling the baseline performance and limits of machine learning models for adaptive immune receptor repertoire classification
Kanduri, C., Pavlovic, M., Scheffer, L., Motwani, K., Chernigovskaya, M., Greiff, V., Sandve, G. K.
10.1101/2021.05.23.445346 — Posted: 2021-05-23 — Discussion: 2023-02-15  GigaScience
Construction of a new chromosome-scale, long-read reference genome assembly of the Syrian hamster, Mesocricetus auratus
Harris, R. A., Raveendran, M., Lyfoung, D. T., Sedlazeck, F. J., Mahmoud, M., Prall, T., Karl, J., Doddapaneni, H., Meng, Q., Han, Y., Muzny, D., Wiseman, R. W., O'Connor, D. H., Rogers, J.
10.1101/2021.07.05.451071 — Posted: 2021-07-05 — Discussion: 2023-02-15  GigaScience
Loop detection using Hi-C data with HiCExplorer
Wolff, J., Backofen, R., Gruening, B.
10.1101/2020.03.05.979096 — Posted: 2020-03-06 — Discussion: 2023-02-15  GigaScience
Monash DaCRA fPET-fMRI: A DAtaset for Comparison of Radiotracer Administration for high temporal resolution functional FDG-PET
Jamadar, S. D., Liang, E. X., Zhong, S., Ward, P. G., Carey, A., McIntyre, R., Chen, Z., Egan, G. D.
10.1101/2021.08.02.454708 — Posted: 2021-08-03 — Discussion: 2023-02-14  GigaScience
Long-read and chromosome-scale assembly of the hexaploid wheat genome achieves higher resolution for research and breeding
Aury, J.-M., Engelen, S., Istace, B., Monat, C., Lasserre-Zuber, P., Belser, C., Cruaud, C., Rimbert, H., Leroy, P., Arribat, S., Dufau, I., Bellec, A., Grimbichler, D., Papon, N., Paux, E., Ranoux, M., Alberti, A., Wincker, P., Choulet, F.
10.1101/2021.08.24.457458 — Posted: 2021-08-24 — Discussion: 2022-11-27  GigaScience
Message in a Bottle, Metabarcoding Enables Biodiversity Comparisons Across Ecoregions
Steinke, D., deWaard, S. L., Sones, J. E., Ivanova, N. V., Prosser, S. W., Perez, K., Braukmann, T. W. A., Milton, M., Zakharov, E., deWaard, J. R., Ratnasingham, S., Hebert, P. D. N.
10.1101/2021.07.05.451165 — Posted: 2021-07-06 — Discussion: 2022-10-10  GigaScience
Tourmaline: a workflow for rapid and reproducible amplicon sequence analysis using QIIME 2 and Snakemake
Thompson, L. R., Anderson, S. R., Den Uyl, P. A., Patin, N. V., Sanderson, G., Goodwin, K. D.
10.1101/2021.09.15.460495 — Posted: 2021-09-17 — Discussion: 2022-09-05  GigaScience

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