bioRxiv/medRxiv TRiP Review Activity

394 Reviews — GigaScience — All Subjects

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An accessible infrastructure for artificial intelligence using a docker-based Jupyterlab in Galaxy
Kumar, A., Cuccuru, G., Gruening, B., Backofen, R.
10.1101/2022.07.08.499333 — Posted: 2022-07-11 — Discussion: 2023-05-02  GigaScience
DivBrowse - interactive visualization and exploratory data analysis of variant call matrices
König, P., Beier, S., Mascher, M., Stein, N., Lange, M., Scholz, U.
10.1101/2022.09.22.509016 — Posted: 2022-09-23 — Discussion: 2023-05-02  GigaScience
Cell type-specific interpretation of noncoding variants using deep learning-based methods
Sindeeva, M., Chekanov, N., Avetisian, M., Baranov, N., Malkin, E., Lapin, A., Kardymon, O., Fishman, V.
10.1101/2021.12.31.474623 — Posted: 2022-01-01 — Discussion: 2023-04-10  GigaScience
Contamination detection and microbiome exploration with GRIMER
Piro, V. C., Renard, B. Y.
10.1101/2021.06.22.449360 — Posted: 2021-06-22 — Discussion: 2023-04-10  GigaScience
ViReMa: A Virus Recombination Mapper of Next-Generation Sequencing data characterizes diverse recombinant viral nucleic acids
Sotcheff, S., Zhou, Y., Sun, Y., Johnson, J. E., Torbett, B., Routh, A. L.
10.1101/2022.03.12.484090 — Posted: 2022-03-13 — Discussion: 2023-04-10  GigaScience
Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim
Yang, C., Lo, T., Nip, K. M., Hafezqorani, S., Warren, R. L., Birol, I.
10.1101/2021.11.19.469328 — Posted: 2021-11-20 — Discussion: 2023-04-10  GigaScience
The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology
Ballard, J. W. O., Field, M. A., Edwards, R. J., Wilson, L. A. B., Koungoulos, L. G., Rosen, B. R., Chernoff, B., Dudchenko, O., Omer, A., Keilwagen, J., Skvortsova, K., Bogdanovic, O., Chan, E., Zammit, R., Hayes, V., Aiden, E. L.
10.1101/2023.01.26.525801 — Posted: 2023-01-27 — Discussion: 2023-04-10  GigaScience
FAIR Data Station for Lightweight Metadata Management & Validation of Omics Studies
Nijsse, B., Schaap, P. J., Koehorst, J. J.
10.1101/2022.08.03.502622 — Posted: 2022-08-05 — Discussion: 2023-04-10  GigaScience
Defining the Characteristics of Type I Interferon Stimulated Genes: Insight from Expression Data and Machine Learning
Chai, H., Hughes, J., Gu, Q., Robertson, D. L.
10.1101/2021.10.08.463622 — Posted: 2021-10-09 — Discussion: 2023-03-24  GigaScience
3D-Beacons: Decreasing the gap between protein sequences and structures through a federated network of protein structure data resources
Varadi, M., Nair, S. S., Sillitoe, I., Tauriello, G., Anyango, S., Bienert, S., Borges, C., Deshpande, M., Green, T., Hatos, A., Hegedus, T., Hekkelman, M. L., Joosten, R., Jumper, J., Laydon, A., Molodenskiy, D., Piovesan, D., Salladini, E., Salzberg, S. L., Sommer, M. J., Steinegger, M., Suhajda, E., Svergun, D., Tenorio-Ku, L., Tosatto, S., Tunyasuvunakool, K., Waterhouse, A. M., Zidek, A., Hassabis, D., Schwede, T., Orengo, C., Velankar, S.
10.1101/2022.08.01.501973 — Posted: 2022-08-03 — Discussion: 2023-03-24  GigaScience

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