Channel:  Human Pangenome Reference Consortium (HPRC)

171 Articles

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Leveraging Human Pangenome for Improved Somatic Variant Detection
Fu, Q., Xin, Z., Miao, B., Zhang, W., Kong, N., Tang, Z., Ruttenberg, A., Albracht, D., Belter, E. A., Garza, J. E., Tomlinson, C., Mehinovic, E., Shen, J., Zhuo, X., Dong, S., Johnson, B. K., Majewski, M. F., Palmer, T., Jang, H. J., Cheng, Y., Li, Z., Lawson, H. A., Lindsay, T., Li, D., Fulton, R., Shen, H., Jin, S. C., SMaHT Network Assembly/Pangenome Working Group, , Macias-Velasco, J. F., Wang, T.
10.64898/2026.01.04.697580 — Posted: 2026-01-05
FastGxC: Fast and Powerful Context-Specific eQTL Mapping in Bulk and Single-Cell Data
Krockenberger, L., Lu, A., Thompson, M., Liu, C., Gordon, M. G., Ramste, A., Carcamo-Orive, I., Knowles, J. W., Dahl, A., Ye, C. J., Zaitlen, N., Balliu, B.
10.1101/2021.06.17.448889 — Posted: 2025-12-11
A global view of human centromere variation and evolution
Gao, S., Oshima, K. K., Chuang, S.-C., Loftus, M., Montanari, A., Gordon, D. S., Human Genome Structural Variation Consortium, , Human Pangenome Reference Consortium, , Hsieh, P., Konkel, M. K., Ventura, M., Logsdon, G. A.
10.64898/2025.12.09.693231 — Posted: 2025-12-11
Lossless Pangenome Indexing Using Tag Arrays
Eskandar, P., Paten, B., Siren, J.
10.1101/2025.05.12.653561 — Posted: 2025-12-05
Efficient near telomere-to-telomere assembly of Nanopore Simplex reads
Cheng, H., Qu, H., McKenzie, S., Lawrence, K. R., Windsor, R., Vella, M., Park, P. J., Li, H.
10.1101/2025.04.14.648685 — Posted: 2025-11-17
Assembling unmapped reads reveals hidden variation in South Asian genomes
Das, A., Biddanda, A., McCoy, R. C., Schatz, M.
10.1101/2025.05.14.653340 — Posted: 2025-10-30
Characterizing cytosine methylation of polymorphic human transposable element insertions using human pangenome resources
Zhuo, X., Tomlinson, C., Belter, E. A., Kuntala, P. K., Saintilnord, W. N., Jiang, J., Lindsay, T., Macias, J., Fulton, R. S., Wang, T.
10.1101/2024.11.22.623804 — Posted: 2025-10-20
map3C: a computational tool for processing multiomic single-cell Hi-C data
Galasso, J., Wang, Y., Alber, F., Ernst, J., Luo, C.
10.1101/2025.10.10.681728 — Posted: 2025-10-15
GECSI: Large-scale chromatin state imputation from gene expression
Fu, J., Ernst, J.
10.1101/2025.10.02.679828 — Posted: 2025-10-04
Integrated ambient modeling and genetic demultiplexing of single-cell RNA+ATAC multiome experiments with Ambimux
Alvarez, M., Li, T., Lee, S. H. T., Arasu, U. T., Selvarajan, I., Örd, T., Rahmani, E., Chen, Z. J., Avram, O., Kar, A., Kaminska, D., Männistö, V., Halperin, E., Pihlajamäki, J., Luo, C., Kaikkonen, M. U., Zaitlen, N., Pajukanta, P.
10.1101/2025.08.21.671671 — Posted: 2025-08-26

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