Channel:  ENCODE

142 Articles

Mapping and modeling the genomic basis of differential RNA isoform expression at single-cell resolution with LR-Split-seq
Rebboah, E., Reese, F., Williams, K., Balderrama-Gutierrez, G., McGill, C., Trout, D., Rodriguez, I. M., Liang, H., Wold, B. J., Mortazavi, A.
10.1101/2021.04.26.441522 — Posted: 2021-04-27
Three-dimensional Genome Organization Maps in Normal Haematopoietic Stem Cells and Acute Myeloid Leukemia
Wang, B., Kong, L., Babu, D., Choudhary, R., Fam, W., Tng, J. Q., Goh, Y., Wong Jern Han, B., Liu, X., Song, F. F., Chia, P., Chan, M. C., An, O., Tham, C. Y., Benoukraf, T., Yang, H., Wang, W., Chng, W. J., Tenen, D., Fullwood, M. J.
10.1101/2020.04.18.047738 — Posted: 2021-04-06
Efficient and precise single-cell reference atlas mapping with Symphony
Kang, J. B., Nathan, A., Zhang, F., Millard, N., Rumker, L., Moody, D. B., Korsunsky, I., Raychaudhuri, S.
10.1101/2020.11.18.389189 — Posted: 2021-03-16
Genome-wide annotation of gene regulatory elements linked to cell fitness
Klann, T., Barrera, A., Ettyreddy, A., Rickels, R., Bryois, J., Jiang, S., Adkar, S., Iglesias, N., Sullivan, P., Reddy, T. E., Crawford, G. E., Gersbach, C.
10.1101/2021.03.08.434470 — Posted: 2021-03-09
Transgenic mice for in vivo epigenome editing with CRISPR-based systems
Gemberling, M., Siklenka, K., Rodriguez, E., Eisinger, K., Barrera, A., Liu, F., Kantor, A., Li, L., Cigliola, V., Hazlett, M., Williams, C., Bartelt, L., Bodle, J., Daniels, H., Rouse, C., Hilton, I., Madigan, V., Asokan, A., Ciofani, M., Poss, K., Reddy, T. E., West, A., Gersbach, C.
10.1101/2021.03.08.434430 — Posted: 2021-03-08
A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2
Delorey, T. M., Ziegler, C. G. K., Heimberg, G., Normand, R., Yang, Y., Segerstolpe, A., Abbondanza, D., Fleming, S. J., Subramanian, A., Montoro, D. T., Jagadeesh, K. A., Dey, K., Sen, P., Slyper, M., Pita-Juarez, Y., Phillips, D., Bloom-Ackermann, Z., Barkas, N., Ganna, A., Gomez, J., Normandin, E., Naderi, P., Popov, Y. V., Raju, S. S., Niezen, S., Tsai, L. T.- Y., Siddle, K. J., Sud, M., Tran, V. M., Karuthedath Vellarikkal, S., Amir-Zilberstein, L., Atri, D. S., Beechem, J. M., Brook, O. R., Chen, J., Divakar, P., Dorceus, P., Engreitz, J. M., Essene, A., Fitzgerald, D. M., Fropf, R., Gaz
10.1101/2021.02.25.430130 — Posted: 2021-02-25
A cell atlas of chromatin accessibility across 25 adult human tissues
Zhang, K., Hocker, J. D., Miller, M., Hou, X., Chiou, J., Poirion, O. B., Qiu, Y., Li, Y. E., Gaulton, K. J., Wang, A., Preissl, S., Ren, B.
10.1101/2021.02.17.431699 — Posted: 2021-02-17
Genome-wide Identification of the Genetic Basis of Amyotrophic Lateral Sclerosis
Zhang, S., Cooper-Knock, J., Weimer, A. K., Shi, M., Moll, T., Harvey, C., Nezhad, H. G., Franklin, J., Souza, C. d. S., Wang, C., Li, J., Elhaik, E., Eitan, C., Hornstein, E., Kenna, K. P., Project MinE Sequencing Consortium, , Veldink, J., Ferraiuolo, L., Shaw, P. J., Snyder, M. P.
10.1101/2020.11.14.382606 — Posted: 2021-02-15
Discovery and Functional Characterization of Pro-growth Enhancers in Human Cancer Cells
Chen, P., Fiaux, P., Li, B., Zhang, K., Kubo, N., Jiang, S., Hu, R., Wu, S., Wang, M., Wang, W., McVicker, G. P., Mischel, P., Ren, B.
10.1101/2021.02.04.429675 — Posted: 2021-02-05
Genome-wide functional screen of 3'UTR variants uncovers causal variants for human disease and evolution
Griesemer, D., Xue, J. R., Reilly, S. K., Ulirsch, J. C., Kukreja, K., Davis, J., Kanai, M., Yang, D. K., Montgomery, S. B., Novina, C. D., Tewhey, R., Sabeti, P. C.
10.1101/2021.01.13.424697 — Posted: 2021-01-13

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