Channel:  ENCODE

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

136 Articles

Improving the informativeness of Mendelian disease-derived pathogenicity scores for common disease
Samuel S. Kim, Kushal K. Dey, Omer Weissbrod, Carla Marquez-Luna, Steven Gazal, Alkes L. Price
10.1101/2020.01.02.890657 — Posted: 2020-07-09
An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis
Xiang, G., Keller, C. A., Heuston, E. F., Giardine, B. M., An, L., Wixom, A. Q., Miller, A., Cockburn, A., Sauria, M. E. G., Weaver, K., Lichtenberg, J., Gottgens, B., Li, Q., Bodine, D., Mahony, S., Taylor, J., Blobel, G. A., Weiss, M. J., Cheng, Y., Yue, F., Hughes, J., Higgs, D. R., Zhang, Y., Hardison, R. C.
10.1101/731729 — Posted: 2020-01-12
Zero-shot imputations across species are enabled through joint modeling of human and mouse epigenomics
Schreiber, J., Hegde, D., Noble, W. S.
10.1101/801183 — Posted: 2020-07-24
Global reference mapping and dynamics of human transcription factor footprints
Vierstra, J., Lazar, J., Sandstrom, R., Halow, J., Lee, K., Bates, D., Diegel, M., Dunn, D., Neri, F., Haugen, E., Rynes, E., Reynolds, A., Nelson, J., Johnson, A., Frerker, M., Buckley, M., Kaul, R., Meuleman, W., Stamatoyannopoulos, J. A.
10.1101/2020.01.31.927798 — Posted: 2020-02-01
3D Epigenomic Characterization Reveals Insights Into Gene Regulation and Lineage Specification During Corticogenesis
Song, M., Pebworth, M.-P., Yang, X., Abnousi, A., Fan, C., Wen, J., Rosen, J., Choudhary, M., Cui, X., Jones, I., Bergenholtz, S., Eze, U., Juric, I., Li, B., Maliskova, L., Liu, W., Pollen, A., Li, Y., Wang, T., Hu, M., Kriegstein, A., Shen, Y.
10.1101/2020.02.24.963652 — Posted: 2020-02-25
Differential RNA editing between epithelial and mesenchymal tumors impacts mRNA abundance in immune response pathways
Chan, T., Fu, T., Bahn, J. H., Jun, H.-I., Lee, J.-H., Quinones-Valdez, G., Cheng, C., Xiao, X.
10.1101/2020.03.06.981191 — Posted: 2020-03-08
A limited set of transcriptional programs define major cell types
Breschi, A., Munoz-Aguirre, M., Wucher, V., Davis, C. A., Garrido-Martin, D., Djebali, S., Gillis, J., Pervouchine, D. D., Vlasova, A., Dobin, A., Zaleski, C., Drenkow, J., Danyko, C., Scavelli, A., Reverter, F., Snyder, M. P., Gingeras, T. R., Guigo, R.
10.1101/857169 — Posted: 2020-03-11
Extracellular microRNA 3' end modification across diverse body fluids
Koyano, K., Bahn, J., Xiao, X.
10.1101/2020.03.24.006551 — Posted: 2020-03-25
Transcriptome-Wide Combinatorial RNA Structure Probing in Living Cells
Chan, D., Feng, C., England, W., Wyman, D., Flynn, R., Wang, X., Shi, Y., Mortazavi, A., Spitale, R.
10.1101/2020.03.24.006866 — Posted: 2020-03-27
Functionally-informed fine-mapping and polygenic localization of complex trait heritability
Weissbrod, O., Hormozdiari, F., Benner, C., Cui, R., Ulirsch, J., Gazal, S., Schoech, A. P., van de Geijn, B., Reshef, Y., Marquez-Luna, C., O'Connor, L. J., Pirinen, M., Finucane, H. K., Price, A. L.
10.1101/807792 — Posted: 2020-04-02

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