Channel:  ENCODE

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

141 Articles

Leveraging fine-mapping and non-European training data to improve cross-population polygenic risk scores
Weissbrod, O., Kanai, M., Shi, H., Gazal, S., Peyrot, W., Khera, A., Okada, Y., The Biobank Japan Project, , Martin, A., Finucane, H., Price, A. L.
10.1101/2021.01.19.21249483 — Posted: 2021-08-20
Integrative approaches to improve the informativeness of deep learning models for human complex diseases
Dey, K. K., Kim, S. S., Gazal, S., Nasser, J., Engreitz, J. M., Price, A.
10.1101/2020.09.08.288563 — Posted: 2021-08-13
Systematic comparison of experimental assays and analytical pipelines for identification of active enhancers genome-wide
Yao, L., Liang, J., Ozer, A., Leung, A. K.-Y., ENCODE Consortium, , Lis, J. T., Yu, H.
10.1101/2021.06.02.446833 — Posted: 2021-06-04
Glucocorticoid receptor collaborates with pioneer factors and AP-1 to execute genome-wide regulation
Wissink, E. M., Martinez, D. M., Ehmsen, K. T., Yamamoto, K. R., Lis, J. T.
10.1101/2021.06.01.444518 — Posted: 2021-06-01
Axes of inter-sample variability among transcriptional neighborhoods reveal disease associated cell states in single-cell data
Reshef, Y. A., Rumker, L., Kang, J. B., Nathan, A., Korsunsky, I., Asgari, S., Murray, M. B., Moody, D. B., Raychaudhuri, S.
10.1101/2021.04.19.440534 — Posted: 2021-05-27
Leveraging single-cell ATAC-seq to identify disease-critical fetal and adult brain cell types
Kim, S. S., Jagadeesh, K., Dey, K. K., Shen, A. Z., Raychaudhuri, S., Kellis, M., Price, A. L.
10.1101/2021.05.20.445067 — Posted: 2021-05-21
Parallel Characterization of cis-Regulatory Elements for Multiple Genes Using CRISPRpath
Ren, X., Wang, M., Li, B., Jamieson, K., Zheng, L., Jones, I. R., Li, B., Takagi, M. A., Lee, J., Maliskova, L., Tam, T. W., Yu, M., Hu, R., Lee, L., Abnousi, A., Li, G., Li, Y., Hu, M., Ren, B., Wang, W., Shen, Y.
10.1101/2021.02.19.431931 — Posted: 2021-05-20
A catalog of transcription start sites across 115 human tissue and cell types
Moore, J. E., Zhang, X.-O., Elhajjajy, S. I., Fan, K., Reese, F., Mortazavi, A., Weng, Z.
10.1101/2021.05.12.443890 — Posted: 2021-05-13
Topologically Associating Domain Boundaries are Commonly Required for Normal Genome Function
Rajderkar, S., Barozzi, I., Zhu, Y., Hu, R., Zhang, Y., Li, B., Fukuda-Yuzawa, Y., Kelman, G., Akeza, A., Blow, M. J., Pham, Q., Harrington, A. N., Godoy, J., Meky, E. M., von Maydell, K., Novak, C. S., Plajzer-Frick, I., Afzal, V., Tran, S., Talkowski, M. E., Llyod, K. C. K., Ren, B., Dickel, D. E., Visel, A., Pennacchio, L. A.
10.1101/2021.05.06.443037 — Posted: 2021-05-07
Mapping and modeling the genomic basis of differential RNA isoform expression at single-cell resolution with LR-Split-seq
Rebboah, E., Reese, F., Williams, K., Balderrama-Gutierrez, G., McGill, C., Trout, D., Rodriguez, I. M., Liang, H., Wold, B. J., Mortazavi, A.
10.1101/2021.04.26.441522 — Posted: 2021-04-27

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