Channel:  NCI Human Tumor Atlas Network

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

72 Articles

Quantitative image analysis pipeline for detecting circulating hybrid cells in immunofluorescence images with human-level accuracy
Anderson, A., Theison, H., Baik, J., Gibbs, S., Wong, M. H., Chang, Y. H.
10.1101/2023.08.24.554733 — Posted: 2023-08-26
Longitudinal and multimodal auditing of tumor adaptation to CDK4/6 inhibitors in HR+ metastatic breast cancers
Creason, A. L., Egger, J., Watson, C., Sivagnanam, S., Chin, K., MacPherson, K., Lin, J.-R., Chen, Y.-A., Johnson, B. E., Feiler, H. S., Galipeau, D., Navin, N. E., Demir, E., Chang, Y. H., Corless, C. L., Mitri, Z. I., Thomas, G., Sorger, P. K., Adey, A. C., Coussens, L. M., Gray, J. W., Mills, G. B., Goecks, J.
10.1101/2023.09.27.557464 — Posted: 2023-09-29
Analysis of ductal carcinoma in situ by self-reported race reveals molecular differences related to outcome.
Strand, S. H., Houlahan, K. E., Branch, V., Lynch, T., Harmon, B., Couch, F., Gallagher, K., Kilgore, M., Wei, S., DeMichele, A., King, T., McAuliffe, P., Curtis, C., Owzar, K., Marks, J. R., Colditz, G. A., Hwang, E. S., West, R. B.
10.1101/2023.09.28.560000 — Posted: 2023-10-02
Matrix and analysis metadata standards (MAMS) to facilitate harmonization and reproducibility of single-cell data
Wang, Y., Sarfraz, I., Teh, W. K., Sokolov, A., Herb, B. R., Creasy, H. H., Virshup, I., Dries, R., Degatano, K., Mahurkar, A., Schnell, D. J., Madrigal, P., Hilton, J., Gehlenborg, N., Tickle, T., Campbell, J. D.
10.1101/2023.03.06.531314 — Posted: 2023-03-07
Temporal recording of mammalian development and precancer
Islam, M., Yang, Y., Simmons, A. J., Shah, V. M., Pavan, M. K., Xu, Y., Tasneem, N., Chen, Z., Trinh, L. T., Molina, P., Ramirez-Solano, M. A., Sadien, I., Dou, J., Chen, K., Magnuson, M. A., Rathmell, J., Macara, I. G., Winton, D. J., Liu, Q., Zafar, H., Kalhor, R., Church, G. M., Shrubsole, M. J., Coffey, R. J., Lau, K.
10.1101/2023.12.18.572260 — Posted: 2023-12-19
Multiplexed 3D Analysis of Immune States and Niches in Human Tissue
Yapp, C., Nirmal, A. J., Zhou, F. Y., Maliga, Z., Tefft, J., Montero Llopis, P., Murphy, G. F., Lian, C., Danuser, G., Santagata, S., Sorger, P. K.
10.1101/2023.11.10.566670 — Posted: 2024-03-28
2D and 3D multiplexed subcellular profiling of nuclear instability in human cancer
Coy, S., Cheng, B., Lee, J. S., Rashid, R., Browning, L., Xu, Y., Chakrabarty, S. S., Yapp, C., Chan, S., Tefft, J. B., Spektor, A., Ligon, K. L., Baker, G. J., Pellman, D., Sorger, P. K., Santagata, S.
10.1101/2023.11.07.566063 — Posted: 2023-11-11
Differential chromatin accessibility and transcriptional dynamics define breast cancer subtypes and their lineages
Iglesia, M. D., Jayasinghe, R. G., Chen, S., Terekhanova, N. V., Herndon, J. M., Storrs, E., Karpova, A., Zhou, D. C., Naser Al Deen, N., Shinkle, A. T., Lu, R. J.-H., Caravan, W., Houston, A., Zhao, Y., Sato, K., Lal, P., Street, C., Rodrigues, F. M., Southard-Smith, A. N., Targino da Costa, A. L. N., Zhu, H., Mo, C.-K., Crowson, L., Fulton, R. S., Wyczalkowski, M. A., Fronick, C. C., Fulton, L. A., Sun, H., Davies, S. R., Appelbaum, E. L., Chasnoff, S. E., Carmody, M., Brooks, C., Liu, R., Wendl, M. C., Oh, C., Bender, D., Cruchaga, C., Harari, O., Bredemeyer, A., Lavine, K., Bose, R., Marge
10.1101/2023.10.31.565031 — Posted: 2023-11-02
Tumor microenvironmental determinants of high-risk DCIS progression
Glencer, A., Ramalingam, K., Schindler, N., Mori, H., Ghule, P., Lee, K. C., Nachmanson, D., Officer, A., Harismendy, O., Stein, J. L., Stein, G., Weaver, D., Yau, C., Hirst, G. L., Campbell, M. J., Esserman, L. J., Borowsky, A. D.
10.1101/2023.12.01.569676 — Posted: 2024-03-19
A longitudinal single-cell and spatial multiomic atlas of pediatric high-grade glioma
Sussman, J. H., Oldridge, D. A., Yu, W., Chen, C.-H., Zellmer, A. M., Rong, J., Parvaresh-Rizi, A., Thadi, A., Xu, J., Bandyopadhyay, S., Sun, Y., Wu, D., Hunter, C. E., Brosius, S., Ahn, K. J., Baxter, A. E., Koptyra, M. P., Vanguri, R., McGrory, S., Resnick, A. C., Storm, P. B., Amankulor, N. M., Santi, M., Viaene, A. N., Zhang, N., De Raedt, T., Cole, K., Tan, K.
10.1101/2024.03.06.583588 — Posted: 2024-03-08

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