Channel:  NCI Human Tumor Atlas Network

74 Articles

Dual indexed design of in-Drop single-cell RNA-seq libraries improves sequencing quality and throughput
Southard-Smith, A. N., Simmons, A. J., Chen, B., Jones, A. L., Ramirez-Solano, M. A., Vega, P. N., Scurrah, C. R., Zhao, Y., Brenan, M. J., Xuan, J., Porter, E. B., Chen, X., Brenan, C. J. H., Liu, Q., Quigley, L. N. M., Lau, K. N.
10.1101/835488 — Posted: 2019-11-08
Surface protein imputation from single cell transcriptomes by deep neural networks
Zhou, Z., Wang, J., Ye, C., Zhang, N.
10.1101/671180 — Posted: 2019-11-02
scATAC-pro: a comprehensive workbench for single-cell chromatin accessibility sequencing data
Yu, W., Uzun, Y., Zhu, Q., Chen, C., Tan, K.
10.1101/824326 — Posted: 2019-10-31
Unmasking the tissue microecology of ductal carcinoma in situ with deep learning
Narayanan, P. L., Raza, S. E. A., Hall, A., Marks, J. R., King, L., West, R. B., Hernandez, L., Dowsett, M., Gusterson, B., Maley, C., Hwang, S. E., Yuan, Y.
10.1101/812735 — Posted: 2019-10-28
Genetic Heterogeneity Profiling by Single Cell RNA Sequencing
Zhou, Z., Zhang, N. R., Xu, B., Minn, A.
10.1101/457622 — Posted: 2019-10-17
Machine and deep learning single-cell segmentation and quantification of multi-dimensional tissue images
McKinley, E. T., Roland, J. T., Franklin, J. L., Macedonia, M. C., Vega, P. N., Shin, S., Coffey, R. J., Lau, K.
10.1101/790162 — Posted: 2019-10-02
Commensal-derived succinate enhances tuft cell specification and suppresses ileal inflammation
Banerjee, A., Herring, C. A., Kim, H., Chen, B., Simmons, A. J., Southard-Smith, A. N., White, J. R., Ramirez Solano, M. A., Scoville, E. A., Liu, Q., Washington, M. K., Lau, K. S.
10.1101/776724 — Posted: 2019-09-20
Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive front
Schürch, C. M., Bhate, S. S., Barlow, G. L., Phillips, D. J., Noti, L., Zlobec, I., Chu, P., Black, S., Demeter, J., McIlwain, D. R., Samusik, N., Goltsev, Y., Nolan, G. P.
10.1101/743989 — Posted: 2019-08-24
SHIFT: speedy histological-to-immunofluorescent translation of whole slide images enabled by deep learning
Burlingame, E. A., McDonnell, M., Schau, G. F., Thibault, G., Lanciault, C., Morgan, T., Johnson, B. E., Corless, C., Gray, J. W., Chang, Y. H.
10.1101/730309 — Posted: 2019-08-15
Highly multiplexed immunofluorescence images and single-cell data of immune markers in tonsil and lung cancer
Rashid, R., Gaglia, G., Chen, Y.-A., Lin, J.-R., Du, Z., Maliga, Z., Schapiro, D., Yapp, C., Muhlich, J., Sokolov, A., Sorger, P., Santagata, S.
10.1101/704114 — Posted: 2019-07-17

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