Channel:  NCI Human Tumor Atlas Network

74 Articles

2D and 3D multiplexed subcellular profiling of nuclear instability in human cancer
Coy, S., Cheng, B., Lee, J. S., Rashid, R., Browning, L., Xu, Y., Chakrabarty, S. S., Yapp, C., Chan, S., Tefft, J. B., Spektor, A., Ligon, K. L., Baker, G. J., Pellman, D., Sorger, P. K., Santagata, S.
10.1101/2023.11.07.566063 — Posted: 2023-11-11
Differential chromatin accessibility and transcriptional dynamics define breast cancer subtypes and their lineages
Iglesia, M. D., Jayasinghe, R. G., Chen, S., Terekhanova, N. V., Herndon, J. M., Storrs, E., Karpova, A., Zhou, D. C., Naser Al Deen, N., Shinkle, A. T., Lu, R. J.-H., Caravan, W., Houston, A., Zhao, Y., Sato, K., Lal, P., Street, C., Rodrigues, F. M., Southard-Smith, A. N., Targino da Costa, A. L. N., Zhu, H., Mo, C.-K., Crowson, L., Fulton, R. S., Wyczalkowski, M. A., Fronick, C. C., Fulton, L. A., Sun, H., Davies, S. R., Appelbaum, E. L., Chasnoff, S. E., Carmody, M., Brooks, C., Liu, R., Wendl, M. C., Oh, C., Bender, D., Cruchaga, C., Harari, O., Bredemeyer, A., Lavine, K., Bose, R., Marge
10.1101/2023.10.31.565031 — Posted: 2023-11-02
Analysis of ductal carcinoma in situ by self-reported race reveals molecular differences related to outcome.
Strand, S. H., Houlahan, K. E., Branch, V., Lynch, T., Harmon, B., Couch, F., Gallagher, K., Kilgore, M., Wei, S., DeMichele, A., King, T., McAuliffe, P., Curtis, C., Owzar, K., Marks, J. R., Colditz, G. A., Hwang, E. S., West, R. B.
10.1101/2023.09.28.560000 — Posted: 2023-10-02
Signal recovery in single cell batch integration
Zhang, Z., Mathew, D., Lim, T., Mason, K., Martinez, C. M., Huang, S., Wherry, E. J., Susztak, K., Minn, A. J., Ma, Z., Zhang, N. R.
10.1101/2023.05.05.539614 — Posted: 2023-09-23
Quantitative image analysis pipeline for detecting circulating hybrid cells in immunofluorescence images with human-level accuracy
Anderson, A., Theison, H., Baik, J., Gibbs, S., Wong, M. H., Chang, Y. H.
10.1101/2023.08.24.554733 — Posted: 2023-08-26
Multiplex imaging of localized prostate tumors reveals changes in mast cell type composition and spatial organization of AR-positive cells in the tumor microenvironment
Ak, C., Sayar, Z., Thibault, G., Burlingame, E., Eng, J., Chitsazan, A., Adey, A., Boniface, C., Spellman, P. T., Thomas, G. V., Kopp, R., Demir, E., Chang, Y. H., Stavrinides, V., Eksi, S. E.
10.1101/2023.08.18.553854 — Posted: 2023-08-21
MIM-CyCIF: Masked Imaging Modeling for Enhancing Cyclic Immunofluorescence (CyCIF) with Panel Reduction and Imputation
Sims, Z., Mills, G. B., Chang, Y. H.
10.1101/2023.05.10.540265 — Posted: 2023-08-16
The relationship between diet, plasma glucose, and cancer prevalence across vertebrates
Kapsetaki, S. E., Basile, A. J., Compton, Z. T., Rupp, S. M., Duke, E. G., Boddy, A. M., Harrison, T. M., Sweazea, K. L., Maley, C. C.
10.1101/2023.07.31.551378 — Posted: 2023-08-02
Addressing persistent challenges in digital image analysis of cancerous tissues
Prabhakaran, S., Yapp, C., Baker, G. J., Beyer, J., Chang, Y. H., Creason, A. L., Krueger, R., Muhlich, J., Patterson, N. H., Sidak, K., Sudar, D., Taylor, A. J., Ternes, L., Troidl, J., Yubin, X., Sokolov, A., Tyson, D. R., Participants of the Cell Imaging Hackathon 2022
10.1101/2023.07.21.548450 — Posted: 2023-07-24
Inference of single cell profiles from histology stains with the Single-Cell omics from Histology Analysis Framework (SCHAF)
Comiter, C., Vaishnav, E. D., Ciapmricotti, M., Li, B., Yang, Y., Rodig, S. J., Turner, M., Pfaff, K. L., Jane-Valbuena, J., Slyper, M., Waldman, J., Vigneau, S., Wu, J., Blosser, T. R., Segerstolpe, A., Abravanel, D., Wagle, N., Zhuang, X., Rudin, C. M., Klughammer, J., Rozenblatt-Rosen, O., Kobayash-Kirschvink, K. J., Shu, J., Regev, A.
10.1101/2023.03.21.533680 — Posted: 2023-03-23

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