Channel:  Human Cell Atlas

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

182 Articles

STEM: A Method for Mapping Single-cell and Spatial Transcriptomics Data with Transfer Learning
Hao, M., Luo, E., Chen, Y., Wu, Y., Li, C., Chen, S., Gao, H., Bian, H., Wei, L., Zhang, X.
10.1101/2022.09.23.509186 — Posted: 2023-05-30
WebAtlas pipeline for integrated single cell and spatial transcriptomic data
Li, T., Horsfall, D., Basurto-Lozada, D., Roberts, K., Prete, M., Lawrence, J. E. G., He, P., Tuck, E., Moore, J., Ghazanfar, S., Teichmann, S., Haniffa, M., Bayraktar, O. A.
10.1101/2023.05.19.541329 — Posted: 2023-05-22
Concerted changes in the pediatric single-cell intestinal ecosystem before and after anti-TNF blockade
Zheng, H. B., Doran, B. A., Kimler, K., Yu, A., Tkachev, V., Niederlova, V., Cribbin, K., Fleming, R., Bratrude, B., Betz, K., Cagnin, L., McGuckin, C., Keskula, P., Albanese, A., Sacta, M., de Sousa Casal, J., van Esch, R., Kwong, A. C., Kummerlowe, C., Taliaferro, F., Fiaschi, N., Kou, B., Coetzee, S., Jalal, S., Yabe, Y., Dobosz, M., Wipperman, M. F., Hamon, S., Kalliolias, G. D., Hooper, A., Lim, W. K., Haxhinasto, S., Wei, Y., Ford, M., Ambartsumyan, L., Suskind, D. L., Lee, D., Deutsch, G., Deng, X., Collen, L. V., Mitsialis, V., Snapper, S. B., Wahbeh, G., Shalek, A. K., Ordovas-Montane
10.1101/2021.09.17.21263540 — Posted: 2023-05-11
A spatially resolved single cell genomic atlas of the adult human breast
Kumar, T., Nee, K., Wei, R., He, S., Nguyen, Q., Bai, S., Blake, K., Pein, M., Gong, Y., Sei, E., Hu, M., Casasent, A., Thennavan, A., Li, J., Tran, T., Chen, K., Nilges, B., Kashikar, N., Braubach, O., Cheikh, B., Nikulina, N., Chen, H., Teshome, M., Menegaz, B., Javaid, H., Nagi, C., Montalvan, J., Lev, T., Tifrea, D., Edwards, R., Lin, E., Parajuli, R., Hanson, S., Winocour, S., Thompson, A., Lim, B., Lawson, D., Kessenbrock, K., Navin, N.
10.1101/2023.04.22.537946 — Posted: 2023-04-25
Human SARS-CoV-2 challenge resolves local and systemic response dynamics
Lindeboom, R. G. H., Worlock, K. B., Dratva, L. M., Yoshida, M., Scobie, D., Wagstaffe, H. R., Richardson, L., Wilbrey-Clark, A. L., Barnes, J. L., Polanski, K., Allen-Hyttinen, J., Mehta, P., Sumanaweera, D., Boccacino, J. M., Sungnak, W., Huang, N., Mamanova, L., Kapuge, R., Bolt, L., Prigmore, E., Killingley, B., Kalinova, M., Mayer, M., Boyers, A., Mann, A., Teixeira, V. H., Janes, S. M., Chambers, R. C., Haniffa, M., Catchpole, A., Heyderman, R. S., Noursadeghi, M., Chain, B., Mayer, A., Meyer, K. B., Chiu, C., Nikolic, M. Z., Teichmann, S. A.
10.1101/2023.04.13.23288227 — Posted: 2023-04-25
A Human Breast Cell Atlas Mapping the Homeostatic Cellular Shifts in the Adult Breast
Reed, A. D., Pensa, S., Steif, A., Stenning, J., Kunz, D., He, P., Twigger, A.-J., Kania, K., Barrow, R., Goulding, I., Gomm, J., Jones, L., Marioni, J., Khaled, W. T.
10.1101/2023.04.21.537845 — Posted: 2023-04-22
Inference of single cell profiles from histology stains with the Single-Cell omics from Histology Analysis Framework (SCHAF)
Comiter, C., Vaishnav, E. D., Ciapmricotti, M., Li, B., Yang, Y., Rodig, S. J., Turner, M., Pfaff, K. L., Jane-Valbuena, J., Slyper, M., Waldman, J., Vigneau, S., Wu, J., Blosser, T. R., Segerstolpe, A., Abravanel, D., Wagle, N., Zhuang, X., Rudin, C. M., Klughammer, J., Rozenblatt-Rosen, O., Kobayash-Kirschvink, K. J., Shu, J., Regev, A.
10.1101/2023.03.21.533680 — Posted: 2023-03-23
A human embryonic limb cell atlas resolved in space and time
Zhang, B., He, P., Lawrence, J. E., Wang, S., Tuck, E., Williams, B. A., Roberts, K., Kleshchevnikov, V., Mamanova, L., Bolt, L., Polanski, K., Elmentaite, R., Fasouli, E. S., Prete, M., He, X., Yayon, N., Fu, Y., Yang, H., Liang, C., Zhang, H., Blain, R., Chedotal, A., Fitzpatrick, D., Firth, H., Dean, A., Marioni, J. C., Barker, R. A., Storer, M. A., Wold, B., Zhang, H., Teichmann, S.
10.1101/2022.04.27.489800 — Posted: 2023-03-19
Airway epithelial response to RSV is impaired in multiciliated and goblet cells in asthma
Gay, A. C. A., Banchero, M., Carpaij, O. A., Kole, T., Apperloo, L., van Gosliga, D., Fajar, P. A., Koppelman, G. H., Bont, L., Hendriks, R. W., van den Berge, M., Nawijn, M. C.
10.1101/2023.03.16.532356 — Posted: 2023-03-17
Spatially resolved multiomics of human cardiac niches
Kanemaru, K., Cranley, J., Muraro, D., Miranda, A. M. A., Pett, J. P., Litvinukova, M., Kumasaka, N., Ho, S. Y., Polanski, K., Richardson, L., Mach, L., Dabrowska, M., Richoz, N., Barnett, S. N., Perera, S., Wilbrey-Clark, A. L., Talavera-Lopez, C., Mulas, I., Mahbubani, K. T., Bolt, L., Mamanova, L., Tuck, L., Wang, L., Huang, M. M., Prete, M., Pritchard, S., Dark, J., Saeb-Parsy, K., Patel, M., Clatworthy, M. R., Hübner, N., Chowdhury, R. A., Noseda, M., Teichmann, S. A.
10.1101/2023.01.30.526202 — Posted: 2023-02-03

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