Channel:  Human Cell Atlas

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

182 Articles

Spatial and single-cell transcriptional landscape of human cerebellar development
Aldinger, K. A., Thomson, Z., Haldipur, P., Deng, M., Timms, A. E., Hirano, M., Santpere, G., Roco, C., Rosenberg, A. B., Lorente-Galdos, B., Gulden, F. O., O'Day, D., Overman, L. M., Lisgo, S., Alexandre, P., Sestan, N., Doherty, D., Dobyns, W. B., Seelig, G., Glass, I. A., Millen, K. J.
10.1101/2020.06.30.174391 — Posted: 2020-07-01
Single nucleus multi-omics regulatory atlas of the murine pituitary
Ruf-Zamojski, F. M., Zhang, Z., Zamojski, M., Smith, G. R., Mendelev, N., Liu, H., Nudelman, G., Moriwaki, M., Pincas, H., Gomez Castanon, R., Nair, V. D., Seenarine, N., Amper, M. A. S., Zhou, X., Ongaro, L., Toufaily, C., Schang, G., Nery, J. R., Bartlett, A., Aldridge, A., Jain, N., Childs, G. V., Troyanskaya, O. G., Ecker, J. R., Turgeon, J. L., Welt, C. K., Bernard, D. J., Sealfon, S. C.
10.1101/2020.06.06.138024 — Posted: 2020-06-11
Single nucleus and in situ RNA sequencing reveals cell topographies in the human pancreas
Tosti, L., Hang, Y., Debnath, O., Tiesmeyer, S., Trefzer, T., Steiger, K., Ten, F. W., Lukassen, S., Ballke, S., Kuehl, A. A., Spieckermann, S., Bottino, R., Ishaque, N., Weichert, W., Kim, S. K., Eils, R., Conrad, C.
10.1101/733964 — Posted: 2020-05-03
scConsensus: combining supervised and unsupervised clustering for cell type identification in single-cell RNA sequencing data
Ranjan, B., Schmidt, F., Sun, W., Park, J., Honardoost, M. A., Tan, J., Arul Rayan, N., Prabhakar, S.
10.1101/2020.04.22.056473 — Posted: 2020-04-24
Single-cell atlas of a non-human primate reveals new pathogenic mechanisms of COVID-19
Han, L., Wei, X., Liu, C., Volpe, G., Wang, Z., Pan, T., Yuan, Y., Lei, Y., Lai, Y., Ward, C., Yu, Y., Wang, M., Shi, Q., Wu, T., Wu, L., Liu, Y., Wang, C., Zhang, Y., Sun, H., Yu, H., Zhuang, Z., Tang, T., Huang, Y., Lu, H., Xu, L., Xu, J., Cheng, M., Liu, Y., Wong, C. W., Tan, T., Ji, W., Maxwell, P. H., Yang, H., Wang, J., Zhu, S., Liu, S., Xu, X., Hou, Y., Esteban, M. A., Liu, L.
10.1101/2020.04.10.022103 — Posted: 2020-04-24
Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and highlights inflammatory programs in putative target cells
Muus, C., Luecken, M. D., Eraslan, G., Waghray, A., Heimberg, G., Sikkema, L., Kobayashi, Y., Vaishnav, E. D., Subramanian, A., Smillie, C., Jagadeesh, K., Duong, E. T., Fiskin, E., Torlai Triglia, E., Becavin, C., Ansari, M., Cai, P., Lin, B., Buchanan, J., Chen, S., Shu, J., Haber, A. L., Chung, H., Montoro, D. T., Adams, T., Aliee, H., Allon, S. J., Andrusivova, Z., Angelidis, I., Ashenberg, O., Bassler, K., Becavin, C., Benhar, I., Bergenstrahle, J., Bergenstrahle, L., Bolt, L., Braun, E., Bui, L. T., Chaffin, M., Chichelnitskiy, E., Chiou, J., Conlon, T. M., Cuoco, M. S., Deprez, M., Fisc
10.1101/2020.04.19.049254 — Posted: 2020-04-21
Cells and gene expression programs in the adult human heart
Litvinukova, M., Talavera-Lopez, C., Maatz, H., Reichart, D., Worth, C. L., Lindberg, E. L., Kanda, M., Polanski, K., Fasouli, E. S., Samari, S., Roberts, K., Tuck, E., Heinig, M., DeLaughter, D., McDonough, B., Wakimoto, H., Gorham, J. M., Nadelmann, E., Mahbubani, K. T., Saeb-Parsy, K., Patone, G., Boyle, J. J., Zhang, H., Zhang, H., Viveiros, A., Oudit, G., Bayraktar, O., Seidman, J. G., Seidman, C., Noseda, M., Hubner, N., Teichmann, S. A.
10.1101/2020.04.03.024075 — Posted: 2020-04-10
Single cell profiling of immature human postnatal thymocytes resolves the complexity of intra-thymic lineage differentiation and thymus seeding precursors.
Lavaert, M., Liang, K. L., Vandamme, N., Park, J.-E., Roels, J., Kowalczyk, M. S., Li, B., Ashenberg, O., Tabaka, M., Dionne, D., Tickle, T. L., Slyper, M., Rozenblatt-Rosen, O., Vandekerckhove, B., Leclercq, G., Regev, A., Van Vlierberghe, P., Guilliams, M., Teichmann, S. A., Saeys, Y., Taghon, T.
10.1101/2020.04.07.007237 — Posted: 2020-04-08
SARS-CoV-2 receptor ACE2 and TMPRSS2 are predominantly expressed in a transient secretory cell type in subsegmental bronchial branches
Lukassen, S., Chua, R. L., Trefzer, T., Kahn, N. C., Schneider, M. A., Muley, T., Winter, H., Meister, M., Veith, C., Boots, A. W., Hennig, B. P., Kreuter, M., Conrad, C., Eils, R.
10.1101/2020.03.13.991455 — Posted: 2020-03-30
A single-cell and single-nucleus RNA-seq toolbox for fresh and frozen human tumors
Slyper, M., Porter, C. B. M., Ashenberg, O., Waldman, J., Drokhlyansky, E., Wakiro, I., Smillie, C., Smith-Rosario, G., Wu, J., Dionne, D., Vigneau, S., Jane-Valbuena, J., Napolitano, S., Su, M.-J., Patel, A. G., Karlstrom, A., Gritsch, S., Nomura, M., Waghray, A., Gohil, S. H., Tsankov, A. M., Jerby-Arnon, L., Cohen, O., Klughammer, J., Rosen, Y., Gould, J., Li, B., Nguyen, L., Wu, C. J., Izar, B., Haq, R., Hodi, F. S., Yoon, C. H., Hata, A. N., Baker, S. J., Suva, M. L., Bueno, R., Stover, E. H., Matulonis, U. A., Clay, M. R., Dyer, M. A., Collins, N. B., Wagle, N., Rotem, A., Johnson, B. E.
10.1101/761429 — Posted: 2020-03-30

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