Channel:  Human Cell Atlas

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

184 Articles

Discriminating Mild from Critical COVID-19 by Innate and Adaptive Immune Single-cell Profiling of Bronchoalveolar Lavages
Els Wauters, Pierre Van Mol, Abhishek D. Garg, Sander Jansen, Yannick Van Herck, Lore Vanderbeke, Ayse Bassez, Bram Boeckx, Bert Malengier-Devlies, Anna Timmerman, Thomas Van Brussel, Tina Van Buyten, Rogier Schepers, Elisabeth Heylen, Dieter Dauwe, Christophe Dooms, Jan Gunst, Greet Hermans, Philippe Meersseman, Dries Testelmans, Jonas Yserbyt, Patrick Matthys, Sabine Tejpar, CONTAGIOUS collaborators, Johan Neyts, Joost Wauters, Junbin Qian, Diether Lambrechts
10.1101/2020.07.09.196519 — Posted: 2020-07-10
A single cell atlas of human cornea that defines its development, limbal stem and progenitor cells and the interactions with the limbal niche
Joseph Collin, Rachel Queen, Darin Zerti, Sanja Bojic, Nicky Moyse, Marina Moya-Molina, Chunbo Yang, Gary Reynolds, Rafiqul Hussain, Jonathan M Coxhead, Steven Lisgo, Deborah Henderson, Agatha Joseph, Paul Rooney, Saurabh Ghosh, Che Connon, Muzlifah Haniffa, Francisco Figueiredo, Lyle Armstrong, Majlinda Lako
10.1101/2020.07.09.195438 — Posted: 2020-07-10
Spatial and single-cell transcriptional landscape of human cerebellar development
Aldinger, K. A., Thomson, Z., Haldipur, P., Deng, M., Timms, A. E., Hirano, M., Santpere, G., Roco, C., Rosenberg, A. B., Lorente-Galdos, B., Gulden, F. O., O'Day, D., Overman, L. M., Lisgo, S., Alexandre, P., Sestan, N., Doherty, D., Dobyns, W. B., Seelig, G., Glass, I. A., Millen, K. J.
10.1101/2020.06.30.174391 — Posted: 2020-07-01
Single nucleus multi-omics regulatory atlas of the murine pituitary
Ruf-Zamojski, F. M., Zhang, Z., Zamojski, M., Smith, G. R., Mendelev, N., Liu, H., Nudelman, G., Moriwaki, M., Pincas, H., Gomez Castanon, R., Nair, V. D., Seenarine, N., Amper, M. A. S., Zhou, X., Ongaro, L., Toufaily, C., Schang, G., Nery, J. R., Bartlett, A., Aldridge, A., Jain, N., Childs, G. V., Troyanskaya, O. G., Ecker, J. R., Turgeon, J. L., Welt, C. K., Bernard, D. J., Sealfon, S. C.
10.1101/2020.06.06.138024 — Posted: 2020-06-11
Single nucleus and in situ RNA sequencing reveals cell topographies in the human pancreas
Tosti, L., Hang, Y., Debnath, O., Tiesmeyer, S., Trefzer, T., Steiger, K., Ten, F. W., Lukassen, S., Ballke, S., Kuehl, A. A., Spieckermann, S., Bottino, R., Ishaque, N., Weichert, W., Kim, S. K., Eils, R., Conrad, C.
10.1101/733964 — Posted: 2020-05-03
scConsensus: combining supervised and unsupervised clustering for cell type identification in single-cell RNA sequencing data
Ranjan, B., Schmidt, F., Sun, W., Park, J., Honardoost, M. A., Tan, J., Arul Rayan, N., Prabhakar, S.
10.1101/2020.04.22.056473 — Posted: 2020-04-24
Single-cell atlas of a non-human primate reveals new pathogenic mechanisms of COVID-19
Han, L., Wei, X., Liu, C., Volpe, G., Wang, Z., Pan, T., Yuan, Y., Lei, Y., Lai, Y., Ward, C., Yu, Y., Wang, M., Shi, Q., Wu, T., Wu, L., Liu, Y., Wang, C., Zhang, Y., Sun, H., Yu, H., Zhuang, Z., Tang, T., Huang, Y., Lu, H., Xu, L., Xu, J., Cheng, M., Liu, Y., Wong, C. W., Tan, T., Ji, W., Maxwell, P. H., Yang, H., Wang, J., Zhu, S., Liu, S., Xu, X., Hou, Y., Esteban, M. A., Liu, L.
10.1101/2020.04.10.022103 — Posted: 2020-04-24
Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and highlights inflammatory programs in putative target cells
Muus, C., Luecken, M. D., Eraslan, G., Waghray, A., Heimberg, G., Sikkema, L., Kobayashi, Y., Vaishnav, E. D., Subramanian, A., Smillie, C., Jagadeesh, K., Duong, E. T., Fiskin, E., Torlai Triglia, E., Becavin, C., Ansari, M., Cai, P., Lin, B., Buchanan, J., Chen, S., Shu, J., Haber, A. L., Chung, H., Montoro, D. T., Adams, T., Aliee, H., Allon, S. J., Andrusivova, Z., Angelidis, I., Ashenberg, O., Bassler, K., Becavin, C., Benhar, I., Bergenstrahle, J., Bergenstrahle, L., Bolt, L., Braun, E., Bui, L. T., Chaffin, M., Chichelnitskiy, E., Chiou, J., Conlon, T. M., Cuoco, M. S., Deprez, M., Fisc
10.1101/2020.04.19.049254 — Posted: 2020-04-21
Cells and gene expression programs in the adult human heart
Litvinukova, M., Talavera-Lopez, C., Maatz, H., Reichart, D., Worth, C. L., Lindberg, E. L., Kanda, M., Polanski, K., Fasouli, E. S., Samari, S., Roberts, K., Tuck, E., Heinig, M., DeLaughter, D., McDonough, B., Wakimoto, H., Gorham, J. M., Nadelmann, E., Mahbubani, K. T., Saeb-Parsy, K., Patone, G., Boyle, J. J., Zhang, H., Zhang, H., Viveiros, A., Oudit, G., Bayraktar, O., Seidman, J. G., Seidman, C., Noseda, M., Hubner, N., Teichmann, S. A.
10.1101/2020.04.03.024075 — Posted: 2020-04-10
Single cell profiling of immature human postnatal thymocytes resolves the complexity of intra-thymic lineage differentiation and thymus seeding precursors.
Lavaert, M., Liang, K. L., Vandamme, N., Park, J.-E., Roels, J., Kowalczyk, M. S., Li, B., Ashenberg, O., Tabaka, M., Dionne, D., Tickle, T. L., Slyper, M., Rozenblatt-Rosen, O., Vandekerckhove, B., Leclercq, G., Regev, A., Van Vlierberghe, P., Guilliams, M., Teichmann, S. A., Saeys, Y., Taghon, T.
10.1101/2020.04.07.007237 — Posted: 2020-04-08

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