Channel:  Human Cell Atlas

188 Articles

Batch-Corrected Distance Mitigates Temporal and Spatial Variability for Clustering and Visualization of Single-Cell Gene Expression Data
Liang, S., Dou, J., Iqbal, R., Chen, K.
10.1101/2020.10.08.332080 — Posted: 2020-10-09
Deep learning and alignment of spatially-resolved whole transcriptomes of single cells in the mouse brain with Tangram
Biancalani, T., Scalia, G., Buffoni, L., Avasthi, R., Lu, Z., Sanger, A., Tokcan, N., Vanderburg, C. R., Segerstolpe, A., Zhang, M., Avraham-Davidi, I., Vickovic, S., Nitzan, M., Ma, S., Buenrostro, J. D., Brown, N. B., Fanelli, D., Zhuang, X., Macosko, E., Regev, A.
10.1101/2020.08.29.272831 — Posted: 2020-09-24
Besca, a single-cell transcriptomics analysis toolkit to accelerate translational research
Maedler, S. C., Julien-Laferriere, A., Wyss, L., Phan, M., Kang, A. S. W., Ulrich, E., Schmucki, R., Zhang, J. D., Ebeling, M., Badi, L., Kam-Thong, T., Schwalie, P. C., Hatje, K.
10.1101/2020.08.11.245795 — Posted: 2020-09-01
An organoid and multi-organ developmental cell atlas reveals multilineage fate specification in the human intestine
Yu, Q., Kilik, U., Holloway, E. M., Tsai, Y.-H., Wu, A., Wu, J. H., Czerwinski, M., Childs, C., He, Z., Glass, I. A., Higgins, P. D. R., Treutlein, B., Spence, J. R., Camp, J. G.
10.1101/2020.07.24.219147 — Posted: 2020-07-25
Discriminating Mild from Critical COVID-19 by Innate and Adaptive Immune Single-cell Profiling of Bronchoalveolar Lavages
Els Wauters, Pierre Van Mol, Abhishek D. Garg, Sander Jansen, Yannick Van Herck, Lore Vanderbeke, Ayse Bassez, Bram Boeckx, Bert Malengier-Devlies, Anna Timmerman, Thomas Van Brussel, Tina Van Buyten, Rogier Schepers, Elisabeth Heylen, Dieter Dauwe, Christophe Dooms, Jan Gunst, Greet Hermans, Philippe Meersseman, Dries Testelmans, Jonas Yserbyt, Patrick Matthys, Sabine Tejpar, CONTAGIOUS collaborators, Johan Neyts, Joost Wauters, Junbin Qian, Diether Lambrechts
10.1101/2020.07.09.196519 — Posted: 2020-07-10
A single cell atlas of human cornea that defines its development, limbal stem and progenitor cells and the interactions with the limbal niche
Joseph Collin, Rachel Queen, Darin Zerti, Sanja Bojic, Nicky Moyse, Marina Moya-Molina, Chunbo Yang, Gary Reynolds, Rafiqul Hussain, Jonathan M Coxhead, Steven Lisgo, Deborah Henderson, Agatha Joseph, Paul Rooney, Saurabh Ghosh, Che Connon, Muzlifah Haniffa, Francisco Figueiredo, Lyle Armstrong, Majlinda Lako
10.1101/2020.07.09.195438 — Posted: 2020-07-10
Spatial and single-cell transcriptional landscape of human cerebellar development
Aldinger, K. A., Thomson, Z., Haldipur, P., Deng, M., Timms, A. E., Hirano, M., Santpere, G., Roco, C., Rosenberg, A. B., Lorente-Galdos, B., Gulden, F. O., O'Day, D., Overman, L. M., Lisgo, S., Alexandre, P., Sestan, N., Doherty, D., Dobyns, W. B., Seelig, G., Glass, I. A., Millen, K. J.
10.1101/2020.06.30.174391 — Posted: 2020-07-01
Single nucleus multi-omics regulatory atlas of the murine pituitary
Ruf-Zamojski, F. M., Zhang, Z., Zamojski, M., Smith, G. R., Mendelev, N., Liu, H., Nudelman, G., Moriwaki, M., Pincas, H., Gomez Castanon, R., Nair, V. D., Seenarine, N., Amper, M. A. S., Zhou, X., Ongaro, L., Toufaily, C., Schang, G., Nery, J. R., Bartlett, A., Aldridge, A., Jain, N., Childs, G. V., Troyanskaya, O. G., Ecker, J. R., Turgeon, J. L., Welt, C. K., Bernard, D. J., Sealfon, S. C.
10.1101/2020.06.06.138024 — Posted: 2020-06-11
Single nucleus and in situ RNA sequencing reveals cell topographies in the human pancreas
Tosti, L., Hang, Y., Debnath, O., Tiesmeyer, S., Trefzer, T., Steiger, K., Ten, F. W., Lukassen, S., Ballke, S., Kuehl, A. A., Spieckermann, S., Bottino, R., Ishaque, N., Weichert, W., Kim, S. K., Eils, R., Conrad, C.
10.1101/733964 — Posted: 2020-05-03
scConsensus: combining supervised and unsupervised clustering for cell type identification in single-cell RNA sequencing data
Ranjan, B., Schmidt, F., Sun, W., Park, J., Honardoost, M. A., Tan, J., Arul Rayan, N., Prabhakar, S.
10.1101/2020.04.22.056473 — Posted: 2020-04-24

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