Channel:  Human Cell Atlas

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

184 Articles

Robust clustering and interpretation ofscRNA-seq data using reference componentanalysis
Schmidt, F., Ranjan, B., Xiao Xuan Lin, Q., Krishnan, V., Joanito, I., Honardoost, M. A., Nawaz, Z., Venkatesh, P. N., Tan, J., Rayan, N. A., Ong, S. T., Prabhakar, S.
10.1101/2021.02.16.431527 — Posted: 2021-02-17
Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro
Garcia-Alonso, L., Handfield, L.-F., Roberts, K., Nikolakopoulou, K., Fernando, R. C., Gardner, L., Woodhams, B., Arutyunyan, A., Polanski, K., Hoo, R., Sancho-Serra, C., Li, T., Kwakwa, K., Tuck, E., Kleshchevnikov, V., Tarkowska, A., Porter, T., Mazzeo, C. I., van Dongen, S., Dabrowska, M., Vaskivskyi, V., Mahbubani, K. T., PARK, J.-E., Jimenez-Linan, M., Campos, L., Kiselev, V., Lindskog, C., Ayuk, P., Prigmore, E., Stratton, M. R., Saeb-Parsy, K., Moffett, A., Moore, L., Bayraktar, O. A., Teichmann, S. A., Turco, M. Y., Vento-Tormo, R.
10.1101/2021.01.02.425073 — Posted: 2021-01-04
Spatial multi-omic map of human myocardial infarction
Kuppe, C., Ramirez Flores, R. O., Li, Z., Hannani, M. T., Tanevski, J., Halder, M., Cheng, M., Ziegler, S., Zhang, X., Priester, F., Kaesler, N., Xu, Y., Hoogenboezem, R., Bindels, E., Schneider-Kramann, R., Milting, H., Gesteira Costa Filho, I., Saez Rodriguez, J., Kramann, R.
10.1101/2020.12.08.411686 — Posted: 2020-12-10
Cell segmentation-free inference of cell types from in situ transcriptomics data
Park, J., Choi, W., Tiesmeyer, S., Long, B., Borm, L. E., Garren, E., Nguyen, T. N., Tasic, B., Codeluppi, S., Graf, T., Schlesner, M., Stegle, O., Eils, R., Ishaque, N.
10.1101/800748 — Posted: 2020-11-28
Poised cell circuits in human skin are activated in disease
Reynolds, G., Vegh, P., Fletcher, J., Poyner, E., Stephenson, E., Goh, I., Botting, R., Huang, N., Olabi, B., Dubois, A., Dixon, D., Green, K., Maunder, D., Engelbert, J., Efremova, M., Polanski, K., Jardine, L., Jones, C., Ness, T., Horsfall, D., McGrath, J., Carey, C., Popescu, D.-M., Webb, S., Wang, X.-n., Sayer, B., Park, J.-E., Negri, V., Belokhvostova, D., Lynch, M., McDonald, D., Filby, A., Hagai, T., Meyer, K., Husain, A., Coxhead, J., Vento-Tormo, R., Behjati, S., Lisgo, S., Villani, A.-C., Bacardit, J., Jones, P., OToole, E., Ogg, G., Rajan, N., Reynolds, N., Teichmann, S., Watt, F.
10.1101/2020.11.05.369363 — Posted: 2020-11-05
Integrated Single Cell Atlas of Endothelial Cells of the Human Lung
Schupp, J. C., Adams, T. S., Cosme, C., Brickman Raredon, M. S., Omote, N., Poli, S., Rose, K.-A., Manning, E., Sauler, M., DeIuliis, G., Ahangari, F., Neumark, N., Yuan, Y., Habermann, A. C., Gutierrez, A. J., Bui, L. T., Meyer, K. B., Nawijn, M. C., Teichmann, S. A., Banovich, N., Kropski, J. A., Niklason, L. E., Pe'er, D., Yan, X., Homer, R., Rosas, I. O., Kaminski, N.
10.1101/2020.10.21.347914 — Posted: 2020-10-22
Batch-Corrected Distance Mitigates Temporal and Spatial Variability for Clustering and Visualization of Single-Cell Gene Expression Data
Liang, S., Dou, J., Iqbal, R., Chen, K.
10.1101/2020.10.08.332080 — Posted: 2020-10-09
Deep learning and alignment of spatially-resolved whole transcriptomes of single cells in the mouse brain with Tangram
Biancalani, T., Scalia, G., Buffoni, L., Avasthi, R., Lu, Z., Sanger, A., Tokcan, N., Vanderburg, C. R., Segerstolpe, A., Zhang, M., Avraham-Davidi, I., Vickovic, S., Nitzan, M., Ma, S., Buenrostro, J. D., Brown, N. B., Fanelli, D., Zhuang, X., Macosko, E., Regev, A.
10.1101/2020.08.29.272831 — Posted: 2020-09-24
Besca, a single-cell transcriptomics analysis toolkit to accelerate translational research
Maedler, S. C., Julien-Laferriere, A., Wyss, L., Phan, M., Kang, A. S. W., Ulrich, E., Schmucki, R., Zhang, J. D., Ebeling, M., Badi, L., Kam-Thong, T., Schwalie, P. C., Hatje, K.
10.1101/2020.08.11.245795 — Posted: 2020-09-01
An organoid and multi-organ developmental cell atlas reveals multilineage fate specification in the human intestine
Yu, Q., Kilik, U., Holloway, E. M., Tsai, Y.-H., Wu, A., Wu, J. H., Czerwinski, M., Childs, C., He, Z., Glass, I. A., Higgins, P. D. R., Treutlein, B., Spence, J. R., Camp, J. G.
10.1101/2020.07.24.219147 — Posted: 2020-07-25

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