Channel:  Human Cell Atlas

188 Articles

Single Cell Transcriptomic Landscape of Diabetic Foot Ulcers
Theocharidis, G., Thomas, B. E., Sarkar, D., Pilcher, W. J., Dwivedi, B., Sandoval-Schaefer, T., Sirbulescu, R. F., Kafanas, A., Mezghani, I., Wang, P., Lobao, A., Vlachos, I., Dash, B., Hsia, H. C., Horsley, V., Bhasin, S. S., Veves, A., Bhasin, M.
10.1101/2021.03.11.434413 — Posted: 2021-03-12
Systemic Tissue and Cellular Disruption from SARS-CoV-2 Infection revealed in COVID-19 Autopsies and Spatial Omics Tissue Maps
Park, J., Foox, J., Hether, T., Danko, D., Warren, S., Kim, Y., Reeves, J., Butler, D. J., Mozsary, C., Rosiene, J., Shaiber, A., Afshinnekoo, E., MacKay, M., Bram, Y., Chandar, V., Geiger, H., Craney, A., Velu, P., Melnick, A. M., Hajirasouliha, I., Beheshti, A., Taylor, D., Saravia-Butler, A., Singh, U., Wurtele, E. S., Schisler, J., Fenessey, S., Corvelo, A., Zody, M. C., Germer, S., Salvatore, S., Levy, S., Wu, S., Tatonetti, N., Shapira, S., Salvatore, M., Loda, M., Westblade, L. F., Cushing, M., Rennert, H., Kriegel, A. J., Elemento, O., Imielinski, M., Borczuk, A. C., Meydan, C., Schwar
10.1101/2021.03.08.434433 — Posted: 2021-03-09
DUBStepR: correlation-based feature selection for clustering single-cell RNA sequencing data
Ranjan, B., Sun, W., Park, J., Mishra, K., Xie, R., Alipour, F., Singhal, V., Schmidt, F., Joanito, I., Arul Rayan, N., Gek Liang Lim, M., Prabhakar, S.
10.1101/2020.10.07.330563 — Posted: 2021-03-05
A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2
Delorey, T. M., Ziegler, C. G. K., Heimberg, G., Normand, R., Yang, Y., Segerstolpe, A., Abbondanza, D., Fleming, S. J., Subramanian, A., Montoro, D. T., Jagadeesh, K. A., Dey, K., Sen, P., Slyper, M., Pita-Juarez, Y., Phillips, D., Bloom-Ackermann, Z., Barkas, N., Ganna, A., Gomez, J., Normandin, E., Naderi, P., Popov, Y. V., Raju, S. S., Niezen, S., Tsai, L. T.- Y., Siddle, K. J., Sud, M., Tran, V. M., Karuthedath Vellarikkal, S., Amir-Zilberstein, L., Atri, D. S., Beechem, J. M., Brook, O. R., Chen, J., Divakar, P., Dorceus, P., Engreitz, J. M., Essene, A., Fitzgerald, D. M., Fropf, R., Gaz
10.1101/2021.02.25.430130 — Posted: 2021-02-25
Robust clustering and interpretation ofscRNA-seq data using reference componentanalysis
Schmidt, F., Ranjan, B., Xiao Xuan Lin, Q., Krishnan, V., Joanito, I., Honardoost, M. A., Nawaz, Z., Venkatesh, P. N., Tan, J., Rayan, N. A., Ong, S. T., Prabhakar, S.
10.1101/2021.02.16.431527 — Posted: 2021-02-17
Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro
Garcia-Alonso, L., Handfield, L.-F., Roberts, K., Nikolakopoulou, K., Fernando, R. C., Gardner, L., Woodhams, B., Arutyunyan, A., Polanski, K., Hoo, R., Sancho-Serra, C., Li, T., Kwakwa, K., Tuck, E., Kleshchevnikov, V., Tarkowska, A., Porter, T., Mazzeo, C. I., van Dongen, S., Dabrowska, M., Vaskivskyi, V., Mahbubani, K. T., PARK, J.-E., Jimenez-Linan, M., Campos, L., Kiselev, V., Lindskog, C., Ayuk, P., Prigmore, E., Stratton, M. R., Saeb-Parsy, K., Moffett, A., Moore, L., Bayraktar, O. A., Teichmann, S. A., Turco, M. Y., Vento-Tormo, R.
10.1101/2021.01.02.425073 — Posted: 2021-01-04
Spatial multi-omic map of human myocardial infarction
Kuppe, C., Ramirez Flores, R. O., Li, Z., Hannani, M. T., Tanevski, J., Halder, M., Cheng, M., Ziegler, S., Zhang, X., Priester, F., Kaesler, N., Xu, Y., Hoogenboezem, R., Bindels, E., Schneider-Kramann, R., Milting, H., Gesteira Costa Filho, I., Saez Rodriguez, J., Kramann, R.
10.1101/2020.12.08.411686 — Posted: 2020-12-10
Cell segmentation-free inference of cell types from in situ transcriptomics data
Park, J., Choi, W., Tiesmeyer, S., Long, B., Borm, L. E., Garren, E., Nguyen, T. N., Tasic, B., Codeluppi, S., Graf, T., Schlesner, M., Stegle, O., Eils, R., Ishaque, N.
10.1101/800748 — Posted: 2020-11-28
Poised cell circuits in human skin are activated in disease
Reynolds, G., Vegh, P., Fletcher, J., Poyner, E., Stephenson, E., Goh, I., Botting, R., Huang, N., Olabi, B., Dubois, A., Dixon, D., Green, K., Maunder, D., Engelbert, J., Efremova, M., Polanski, K., Jardine, L., Jones, C., Ness, T., Horsfall, D., McGrath, J., Carey, C., Popescu, D.-M., Webb, S., Wang, X.-n., Sayer, B., Park, J.-E., Negri, V., Belokhvostova, D., Lynch, M., McDonald, D., Filby, A., Hagai, T., Meyer, K., Husain, A., Coxhead, J., Vento-Tormo, R., Behjati, S., Lisgo, S., Villani, A.-C., Bacardit, J., Jones, P., OToole, E., Ogg, G., Rajan, N., Reynolds, N., Teichmann, S., Watt, F.
10.1101/2020.11.05.369363 — Posted: 2020-11-05
Integrated Single Cell Atlas of Endothelial Cells of the Human Lung
Schupp, J. C., Adams, T. S., Cosme, C., Brickman Raredon, M. S., Omote, N., Poli, S., Rose, K.-A., Manning, E., Sauler, M., DeIuliis, G., Ahangari, F., Neumark, N., Yuan, Y., Habermann, A. C., Gutierrez, A. J., Bui, L. T., Meyer, K. B., Nawijn, M. C., Teichmann, S. A., Banovich, N., Kropski, J. A., Niklason, L. E., Pe'er, D., Yan, X., Homer, R., Rosas, I. O., Kaminski, N.
10.1101/2020.10.21.347914 — Posted: 2020-10-22

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