Channel:  Human Cell Atlas

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

182 Articles

Spatial multi-omic map of human myocardial infarction
Kuppe, C., Ramirez Flores, R. O., Li, Z., Hannani, M. T., Tanevski, J., Halder, M., Cheng, M., Ziegler, S., Zhang, X., Priester, F., Kaesler, N., Xu, Y., Hoogenboezem, R., Bindels, E., Schneider-Kramann, R., Milting, H., Gesteira Costa Filho, I., Saez Rodriguez, J., Kramann, R.
10.1101/2020.12.08.411686 — Posted: 2020-12-10
Cell segmentation-free inference of cell types from in situ transcriptomics data
Park, J., Choi, W., Tiesmeyer, S., Long, B., Borm, L. E., Garren, E., Nguyen, T. N., Tasic, B., Codeluppi, S., Graf, T., Schlesner, M., Stegle, O., Eils, R., Ishaque, N.
10.1101/800748 — Posted: 2020-11-28
Poised cell circuits in human skin are activated in disease
Reynolds, G., Vegh, P., Fletcher, J., Poyner, E., Stephenson, E., Goh, I., Botting, R., Huang, N., Olabi, B., Dubois, A., Dixon, D., Green, K., Maunder, D., Engelbert, J., Efremova, M., Polanski, K., Jardine, L., Jones, C., Ness, T., Horsfall, D., McGrath, J., Carey, C., Popescu, D.-M., Webb, S., Wang, X.-n., Sayer, B., Park, J.-E., Negri, V., Belokhvostova, D., Lynch, M., McDonald, D., Filby, A., Hagai, T., Meyer, K., Husain, A., Coxhead, J., Vento-Tormo, R., Behjati, S., Lisgo, S., Villani, A.-C., Bacardit, J., Jones, P., OToole, E., Ogg, G., Rajan, N., Reynolds, N., Teichmann, S., Watt, F.
10.1101/2020.11.05.369363 — Posted: 2020-11-05
Integrated Single Cell Atlas of Endothelial Cells of the Human Lung
Schupp, J. C., Adams, T. S., Cosme, C., Brickman Raredon, M. S., Omote, N., Poli, S., Rose, K.-A., Manning, E., Sauler, M., DeIuliis, G., Ahangari, F., Neumark, N., Yuan, Y., Habermann, A. C., Gutierrez, A. J., Bui, L. T., Meyer, K. B., Nawijn, M. C., Teichmann, S. A., Banovich, N., Kropski, J. A., Niklason, L. E., Pe'er, D., Yan, X., Homer, R., Rosas, I. O., Kaminski, N.
10.1101/2020.10.21.347914 — Posted: 2020-10-22
Batch-Corrected Distance Mitigates Temporal and Spatial Variability for Clustering and Visualization of Single-Cell Gene Expression Data
Liang, S., Dou, J., Iqbal, R., Chen, K.
10.1101/2020.10.08.332080 — Posted: 2020-10-09
Deep learning and alignment of spatially-resolved whole transcriptomes of single cells in the mouse brain with Tangram
Biancalani, T., Scalia, G., Buffoni, L., Avasthi, R., Lu, Z., Sanger, A., Tokcan, N., Vanderburg, C. R., Segerstolpe, A., Zhang, M., Avraham-Davidi, I., Vickovic, S., Nitzan, M., Ma, S., Buenrostro, J. D., Brown, N. B., Fanelli, D., Zhuang, X., Macosko, E., Regev, A.
10.1101/2020.08.29.272831 — Posted: 2020-09-24
Besca, a single-cell transcriptomics analysis toolkit to accelerate translational research
Maedler, S. C., Julien-Laferriere, A., Wyss, L., Phan, M., Kang, A. S. W., Ulrich, E., Schmucki, R., Zhang, J. D., Ebeling, M., Badi, L., Kam-Thong, T., Schwalie, P. C., Hatje, K.
10.1101/2020.08.11.245795 — Posted: 2020-09-01
An organoid and multi-organ developmental cell atlas reveals multilineage fate specification in the human intestine
Yu, Q., Kilik, U., Holloway, E. M., Tsai, Y.-H., Wu, A., Wu, J. H., Czerwinski, M., Childs, C., He, Z., Glass, I. A., Higgins, P. D. R., Treutlein, B., Spence, J. R., Camp, J. G.
10.1101/2020.07.24.219147 — Posted: 2020-07-25
Discriminating Mild from Critical COVID-19 by Innate and Adaptive Immune Single-cell Profiling of Bronchoalveolar Lavages
Els Wauters, Pierre Van Mol, Abhishek D. Garg, Sander Jansen, Yannick Van Herck, Lore Vanderbeke, Ayse Bassez, Bram Boeckx, Bert Malengier-Devlies, Anna Timmerman, Thomas Van Brussel, Tina Van Buyten, Rogier Schepers, Elisabeth Heylen, Dieter Dauwe, Christophe Dooms, Jan Gunst, Greet Hermans, Philippe Meersseman, Dries Testelmans, Jonas Yserbyt, Patrick Matthys, Sabine Tejpar, CONTAGIOUS collaborators, Johan Neyts, Joost Wauters, Junbin Qian, Diether Lambrechts
10.1101/2020.07.09.196519 — Posted: 2020-07-10
A single cell atlas of human cornea that defines its development, limbal stem and progenitor cells and the interactions with the limbal niche
Joseph Collin, Rachel Queen, Darin Zerti, Sanja Bojic, Nicky Moyse, Marina Moya-Molina, Chunbo Yang, Gary Reynolds, Rafiqul Hussain, Jonathan M Coxhead, Steven Lisgo, Deborah Henderson, Agatha Joseph, Paul Rooney, Saurabh Ghosh, Che Connon, Muzlifah Haniffa, Francisco Figueiredo, Lyle Armstrong, Majlinda Lako
10.1101/2020.07.09.195438 — Posted: 2020-07-10

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