Channel:  Human Cell Atlas

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

182 Articles

Myofibroblast transcriptome indicates SFRP2+ fibroblast progenitors in systemic sclerosis skin
Tabib, T., Huang, M. A., Morse, C., Papazoglou, A., Behera, R., Jia, M., Bulik, M., Monier, D. E., Benos, P. V., Chen, W., Domsic, R., Lafyatis, R.
10.1101/2021.04.30.442148 — Posted: 2021-04-30
Profiling of transcribed cis-regulatory elements in single cells
Moody, J., Kouno, T., Suzuki, A., Shibayama, Y., Terao, C., Chang, J.-C., Lopez-Redondo, F., Yip, C. W., Severin, J., Suetsugu, H., Ando, Y., Yamamoto, K., Carninci, P., Shin, J. W., Hon, C.-C.
10.1101/2021.04.04.438388 — Posted: 2021-04-21
Single-cell atlas of human oral mucosa reveals a stromal-neutrophil axis regulating tissue immunity in health and inflammatory disease
Williams, D. W., Greenwell-Wild, T., Brenchley, L., Dutzan, N., Overmiller, A., Sawaya, A. P., Webb, S., Martin, D., Hajishengallis, G., Divaris, K., Morasso, M., Haniffa, M., Moutsopoulos, N. M.
10.1101/2021.04.06.438702 — Posted: 2021-04-07
Cells of the human intestinal tract mapped across space and time
Elmentaite, R., Kumasaka, N., King, H. W., Roberts, K., Dabrowska, M., Pritchard, S., Bolt, L., Vieira, S. F., Mamanova, L., Huang, N., Goh Kai'En, I., Stephenson, E., Engelbert, J., Botting, R. A., Fleming, A., Dann, E., Lisgo, S. N., Katan, M., Leonard, S., Oliver, T. R., Hook, L., Nayak, K., Perrone, F., Campos, L. S., Dominguez Conde, C., Polanski, K., van Dongen, S., Patel, M., Morgan, M., Marioni, J., Bayraktar, O., Meyer, K. B., Zilbauer, M., Uhlig, H., Clatworthy, M. R., Mahbubani, K. T., Saeb-Parsy, K., Haniffa, M. A., James, K. R., Teichmann, S. A.
10.1101/2021.04.07.438755 — Posted: 2021-04-07
Single Cell Transcriptomic Landscape of Diabetic Foot Ulcers
Theocharidis, G., Thomas, B. E., Sarkar, D., Pilcher, W. J., Dwivedi, B., Sandoval-Schaefer, T., Sirbulescu, R. F., Kafanas, A., Mezghani, I., Wang, P., Lobao, A., Vlachos, I., Dash, B., Hsia, H. C., Horsley, V., Bhasin, S. S., Veves, A., Bhasin, M.
10.1101/2021.03.11.434413 — Posted: 2021-03-12
Systemic Tissue and Cellular Disruption from SARS-CoV-2 Infection revealed in COVID-19 Autopsies and Spatial Omics Tissue Maps
Park, J., Foox, J., Hether, T., Danko, D., Warren, S., Kim, Y., Reeves, J., Butler, D. J., Mozsary, C., Rosiene, J., Shaiber, A., Afshinnekoo, E., MacKay, M., Bram, Y., Chandar, V., Geiger, H., Craney, A., Velu, P., Melnick, A. M., Hajirasouliha, I., Beheshti, A., Taylor, D., Saravia-Butler, A., Singh, U., Wurtele, E. S., Schisler, J., Fenessey, S., Corvelo, A., Zody, M. C., Germer, S., Salvatore, S., Levy, S., Wu, S., Tatonetti, N., Shapira, S., Salvatore, M., Loda, M., Westblade, L. F., Cushing, M., Rennert, H., Kriegel, A. J., Elemento, O., Imielinski, M., Borczuk, A. C., Meydan, C., Schwar
10.1101/2021.03.08.434433 — Posted: 2021-03-09
DUBStepR: correlation-based feature selection for clustering single-cell RNA sequencing data
Ranjan, B., Sun, W., Park, J., Mishra, K., Xie, R., Alipour, F., Singhal, V., Schmidt, F., Joanito, I., Arul Rayan, N., Gek Liang Lim, M., Prabhakar, S.
10.1101/2020.10.07.330563 — Posted: 2021-03-05
A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2
Delorey, T. M., Ziegler, C. G. K., Heimberg, G., Normand, R., Yang, Y., Segerstolpe, A., Abbondanza, D., Fleming, S. J., Subramanian, A., Montoro, D. T., Jagadeesh, K. A., Dey, K., Sen, P., Slyper, M., Pita-Juarez, Y., Phillips, D., Bloom-Ackermann, Z., Barkas, N., Ganna, A., Gomez, J., Normandin, E., Naderi, P., Popov, Y. V., Raju, S. S., Niezen, S., Tsai, L. T.- Y., Siddle, K. J., Sud, M., Tran, V. M., Karuthedath Vellarikkal, S., Amir-Zilberstein, L., Atri, D. S., Beechem, J. M., Brook, O. R., Chen, J., Divakar, P., Dorceus, P., Engreitz, J. M., Essene, A., Fitzgerald, D. M., Fropf, R., Gaz
10.1101/2021.02.25.430130 — Posted: 2021-02-25
Robust clustering and interpretation ofscRNA-seq data using reference componentanalysis
Schmidt, F., Ranjan, B., Xiao Xuan Lin, Q., Krishnan, V., Joanito, I., Honardoost, M. A., Nawaz, Z., Venkatesh, P. N., Tan, J., Rayan, N. A., Ong, S. T., Prabhakar, S.
10.1101/2021.02.16.431527 — Posted: 2021-02-17
Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro
Garcia-Alonso, L., Handfield, L.-F., Roberts, K., Nikolakopoulou, K., Fernando, R. C., Gardner, L., Woodhams, B., Arutyunyan, A., Polanski, K., Hoo, R., Sancho-Serra, C., Li, T., Kwakwa, K., Tuck, E., Kleshchevnikov, V., Tarkowska, A., Porter, T., Mazzeo, C. I., van Dongen, S., Dabrowska, M., Vaskivskyi, V., Mahbubani, K. T., PARK, J.-E., Jimenez-Linan, M., Campos, L., Kiselev, V., Lindskog, C., Ayuk, P., Prigmore, E., Stratton, M. R., Saeb-Parsy, K., Moffett, A., Moore, L., Bayraktar, O. A., Teichmann, S. A., Turco, M. Y., Vento-Tormo, R.
10.1101/2021.01.02.425073 — Posted: 2021-01-04

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