Channel:  Human Cell Atlas

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

182 Articles

A proximal-to-distal survey of healthy adult human small intestine and colon epithelium by single-cell transcriptomics
Burclaff, J., Bliton, R. J., Breau, K. A., Ok, M. T., Gomez-Martinez, I., Ranek, J. S., Bhatt, A. P., Purvis, J. E., Woosley, J. T., Magness, S. T.
10.1101/2021.10.05.460818 — Posted: 2021-10-06
Maturation of human intestinal epithelium from pluripotency in vitro
Kilik, U., Yu, Q., Holtackers, R., Seimiya, M., Xavier da Silveira dos Santos, A., Treutlein, B., Spence, J. R., Camp, G.
10.1101/2021.09.24.460132 — Posted: 2021-09-24
Anatomical Structures, Cell Types, and Biomarkers Tables Plus 3D Reference Organs in Support of a Human Reference Atlas
Borner, K., Teichmann, S. A., Quardokus, E. M., Gee, J., Browne, K., Osumi-Sutherland, D., Herr, B. W., Bueckle, A., Paul, H., Haniffa, M. A., Jardine, L., Bernard, A., Ding, S.-L., Miller, J. A., Lin, S., Halushka, M., Boppana, A., Longacre, T. A., Hickey, J., Lin, Y., Valerius, M. T., He, Y., Pryhuber, G., Sun, X., Jorgensen, M., Radtke, A., Wasserfall, C., Ginty, F., Ho, J., Sunshine, J., Beuschel, R. T., Brusko, M., Lee, S., Malhotra, R., Jain, S., Weber, G.
10.1101/2021.05.31.446440 — Posted: 2021-08-09
Gene regulatory networks controlling temporal patterning, neurogenesis and cell fate specification in the mammalian retina.
Lyu, P., Hoang, T., Santiago, C. P., Thomas, E., Timms, A., Appel, H., Gimmen, M., Le, N., Jiang, L., Kim, D. W., Chen, S., Espinoza, D., Tegler, A., Weir, K., Clark, B., Cherry, T. M., Qian, J., Blackshaw, S.
10.1101/2021.07.31.454200 — Posted: 2021-08-02
An atlas of healthy and injured cell states and niches in the human kidney
Lake, B. B., Menon, R., Winfree, S., Hu, Q., Ferreira, R. M., Kalhor, K., Barwinska, D., Otto, E. A., Ferkowicz, M., Diep, D., Plongthongkum, N., Knoten, A., Urata, S., Naik, A. S., Eddy, S., Zhang, B., Wu, Y., Salamon, D., Williams, J. C., Wang, X., Balderrama, K. S., Hoover, P., Murray, E., Vijayan, A., Chen, F., Waikar, S. S., Rosas, S., Wilson, F. P., Palevsky, P. M., Kiryluk, K., Sedor, J. R., Toto, R. D., Parikh, C., Kim, E. H., Macosko, E. Z., Kharchenko, P. V., Gaut, J. P., Hodgin, J. B., Eadon, M. T., Dagher, P. C., El-Achkar, T. M., Zhang, K., Kretzler, M., Jain, S., KPMP Consortium
10.1101/2021.07.28.454201 — Posted: 2021-07-29
Cross-tissue immune cell analysis reveals tissue-specific adaptations and clonal architecture across the human body
Dominguez Conde, C., Gomes, T., Jarvis, L. B., Xu, C., Howlett, S., Rainbow, D., Suchanek, O., King, H., Mamanova, L., Polanski, K., Huang, N., Fasouli, E., Mahbubani, K., Prete, M., Tuck, E., Richoz, N., Tuong, K., Campos, L., Mousa, H., Needham, E., Pritchard, S., Li, T., Elmentaite, R., Park, J., Menon, D., Bayraktar, O., James, L., Meyer, K., Clatworthy, M., Saeb-Parsy, K., Jones, J. L., Teichmann, S. A.
10.1101/2021.04.28.441762 — Posted: 2021-07-20
Single-nucleus cross-tissue molecular reference maps to decipher disease gene function
Eraslan, G., Drokhlyansky, E., Anand, S., Subramanian, A., Fiskin, E., Slyper, M., Wang, J., Van Wittenberghe, N., Rouhana, J. M., Waldman, J., Ashenberg, O., Dionne, D., Win, T. S., Cuoco, M. S., Kuksenko, O., Branton, P. A., Marshall, J. L., Greka, A., Getz, G., Segre, A. V., Aguet, F., Rozenblatt-Rosen, O., Ardlie, K. G., Regev, A.
10.1101/2021.07.19.452954 — Posted: 2021-07-19
Intrinsic and extrinsic regulation of human fetal bone marrow haematopoiesis and perturbations in Down syndrome
Jardine, L., Webb, S., Goh, I., Quiroga Londono, M., Reynolds, G., Mather, M., Olabi, B., Stephenson, E., Botting, R. A., Horsfall, D., Engelbert, J., Maunder, D., Mende, N., Murnane, C., Dann, E., McGrath, J., King, H., Kucinski, I., Queen, R., Carey, C. D., Shrubsole, C., Poyner, E., Acres, M., Jones, C., Ness, T., Coultard, R., Elliot, N., O'Byrne, S., Haltalli, M. L., Lawrence, J. E., Lisgo, S., Balogh, P., Meyer, K. B., Prigmore, E., Ambridge, K., Sarkin Jain, M., Efremova, M., Pickard, K., Creasey, T., Bacardit, J., Henderson, D., Coxhead, J., Filby, A., Hussain, R., Dixon, D., McDonald
10.1101/2021.06.25.449771 — Posted: 2021-06-25
Single nucleus pituitary transcriptomic and epigenetic landscape reveals human stem cell heterogeneity with diverse regulatory mechanisms
Zhang, Z., Zamojski, M., Smith, G. R., Willis, T. L., Yianni, V., Mendelev, N., Pincase, H., Seenarine, N., Amper, M. A. S., Vasoya, M., Nair, V., Turgeon, J. L., Bernard, D. J., Troyanskaya, O. G., Andoniadou, C. L., Sealfon, S. C., Ruf-Zamojski, F. M.
10.1101/2021.06.18.449034 — Posted: 2021-06-18
Implicating Gene and Cell Networks Responsible for Differential COVID-19 Host Responses via an Interactive Single Cell Web Portal
Jin, K., Bardes, E. E., Mitelpunkt, A., Wang, Y. J., Bhatnagar, S., Sengupta, S., Krummel, D. P., Rothenberg, M. E., Aronow, B. J.
10.1101/2021.06.07.447287 — Posted: 2021-06-16

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