Channel:  DREAM

22 Articles

Multiple Myeloma DREAM Challenge Reveals Epigenetic Regulator PHF19 As Marker of Aggressive Disease
Mason, M. J., Schinke, C., Eng, C., Towfic, F., Gruber, F., Dervan, A., White, B. S., Pratapa, A., Guan, Y., Chen, H., Cui, Y., Li, B., Yu, T., Chaibub Neto, E., Mavrommatis, K., Ortiz, M., Lyzogubov, V., Bisht, K., Dai, H. Y., Schmitz, F., Flynt, E., Rozelle, D., Danziger, S. A., Ratushny, A., Dalton, W. S., Goldschmidt, H., Avet-Loiseau, H., Samur, M., Hayete, B., Sonneveld, P., Shain, K. H., Munshi, N., Auclair, D., Hose, D., Morgan, G., Trotter, M., Bassett, D., Goeke, J., Walker, B. A., Thakurta, A., Guinney, J. A.
10.1101/737122 — Posted: 2019-08-22
Assessment of network module identification across complex diseases
Choobdar, S., Ahsen, M. E., Crawford, J., Tomasoni, M., Fang, T., Lamparter, D., Lin, J., Hescott, B., Hu, X., Mercer, J., Natoli, T., Narayan, R., The DREAM Module Identification Challenge Consorti, , Subramanian, A., Zhang, J. D., Stolovitzky, G., Kutalik, Z., Lage, K., Slonim, D. K., Saez-Rodriguez, J., Cowen, L. J., Bergmann, S., Marbach, D.
10.1101/265553 — Posted: 2019-07-30
Creating Standards for Evaluating Tumour Subclonal Reconstruction
Salcedo, A., Tarabichi, M., Espiritu, S. M. G., Deshwar, A. G., David, M., Wilson, N. M., Dentro, S., Wintersinger, J. A., Liu, L. Y., Ko, M., Sivanandan, S., Zhang, H., Zhu, K., Ou Yang, T.-H., Chilton, J. M., Buchanan, A., Lalansingh, C. M., P'ng, C., Anghel, C. V., Umar, I., Lo, B., Zou, W., DREAM SMC-Het Participants, , Simpson, J. T., Stuart, J. M., Anastassiou, D., Guan, Y., Ewing, A., Ellrott, K., Wedge, D. C., Morris, Q. D., Van Loo, P., Boutros, P. C.
10.1101/310425 — Posted: 2019-05-30
Combining accurate tumour genome simulation with crowd-sourcing to benchmark somatic structural variant detection
Lee, A. Y.-W., Ewing, A. D., Ellrott, K., Hu, Y., Houlahan, K. E., Bare, J. C., Espiritu, S. M. G., Huang, V., Dang, K., Chong, Z., Caloian, C., Yamaguchi, T. N., ICGC-TCGA DREAM Somatic Mutation Calling Challenge Participants, , Kellen, M. R., Chen, K., Norman, T. C., Friend, S. H., Guinney, J., Stolovitzky, G., Haussler, D., Margolin, A. A., Stuart, J. M., Boutros, P. C.
10.1101/224733 — Posted: 2018-08-28
Identifying biomarkers of anti-cancer drug synergy using multi-task learning
Aben, N., de Ruiter, J. R., Bosdriesz, E., Kim, Y., Bounova, G., Vis, D. J., Wessels, L. F. A., Michaut, M.
10.1101/243568 — Posted: 2018-08-23
A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection
Fourati, S., Talla, A., Mahmoudian, M., Burkhart, J. G., Klen, R., Henao, R., Aydin, Z., Yeung, K. Y., Ahsen, M. E., Almugbel, R., Jahandideh, S., Liang, X., Nordling, T. E. M., Shiga, M., Stanescu, A., Vogel, R., The Respiratory Viral DREAM Challenge Consortium, , Pandey, G., Chiu, C., McClain, M. T., Woods, C. W., Ginsburg, G. S., Elo, L. L., Tsalik, E. L., Mangravite, L. M., Sieberts, S. K.
10.1101/311696 — Posted: 2018-04-30
Stratification of amyotrophic lateral sclerosis patients: a crowdsourcing approach
Kueffner, R., Zach, N., Bronfeld, M., Norel, R., Atassi, N., Balagurusamy, V., di Camillo, B., Chio, A., Cudkowicz, M., Dillenberger, D., Garcia-Garcia, J., Hardiman, O., Hoff, B., Knight, J., Leitner, M. L., Li, G., Mangravite, L., Norman, T., Wang, L., The ALS Stratification Consortium, , Xiao, J., Fang, W.-C., Peng, J., Stolovitzky, G.
10.1101/294231 — Posted: 2018-04-05
A cancer pharmacogenomic screen powering crowd-sourced advancement of drug combination prediction
Menden, M. P., Wang, D., Guan, Y., Mason, M., Szalai, B., Bulusu, K. C., Yu, T., Kang, J., Jeon, M., Wolfinger, R., Nguyen, T., Zaslavskiy, M., AstraZeneca-Sanger Drug Combination DREAM Consorti, , Jang, I. S., Ghazoui, Z., Ahsen, M. E., Vogel, R., Chaibub Neto, E., Norman, T., Tang, E. K., Garnett, M. J., Di Veroli, G., Fawell, S., Stolovitzky, G., Guinney, J., Dry, J. R., Saez-Rodriguez, J.
10.1101/200451 — Posted: 2018-02-13
Valection: Design Optimization for Validation and Verification Studies
Cooper, C. I., Yao, D., Sendorek, D. H., Yamaguchi, T. N., P'ng, C., Houlahan, K. E., Caloian, C., Fraser, M., SMC-DNA Challenge Participants, , Ellrott, K., Margolin, A. A., Bristow, R. G., Stuart, J. M., Boutros, P. C.
10.1101/254839 — Posted: 2018-01-28
Germline Contamination and Leakage in Whole Genome Somatic Single Nucleotide Variant Detection
Sendorek, D. H., Caloian, C., Ellrott, K., Bare, J. C., Yamaguchi, T. N., Ewing, A. D., Houlahan, K. E., Norman, T. C., Margolin, A. A., Stuart, J. M., Boutros, P. C.
10.1101/204370 — Posted: 2017-10-17

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