Channel:  Johns Hopkins University

This collection includes bioRxiv and medRxiv papers from authors at Johns Hopkins University.

5854 Articles

Spatial model predicts dispersal and cell turnover cause reduced intra-tumor heterogeneity
Bartlomiej Waclaw, Ivana Bozic, Meredith E Pittman, Ralph H Hruban, Bert Vogelstein, Martin A Nowak
10.1101/016824 — Posted: 2015-03-20
Different DNA repair pathways are required following excision and integration of the DNA cut & paste transposon piggyBat in Saccharomyces cerevisiae.
Weifeng She, Courtney Busch Cambouris, Nancy L. Craig
10.1101/015289 — Posted: 2015-02-17
The Evolution of Power and the Divergence of Cooperative Norms
Michael D Makowsky, Paul E Smaldino
10.1101/004416 — Posted: 2015-01-29
HISAT: Hierarchical Indexing for Spliced Alignment of Transcripts
Daehwan Kim, Ben Langmead, Steven Salzberg
10.1101/012591 — Posted: 2014-12-15
Polyester: simulating RNA-seq datasets with differential transcript expression
Alyssa C Frazee, Andrew E Jaffe, Ben Langmead, Jeffrey Leek
10.1101/006015 — Posted: 2014-12-12
CLASS: Accurate and Efficient Splice Variant Annotation from RNA-seq Reads
Li Song, Sarven Sabunciyan, Liliana D Florea
10.1101/011718 — Posted: 2014-11-20
Enhanced Transcriptome Maps from Multiple Mouse Tissues Reveal Evolutionary Constraint in Gene Expression for Thousands of Genes
Dmitri Pervouchine, Sarah Djebali, Alessandra Breschi, Carrie A Davis, Pablo Prieto Barja, Alex Dobin, Andrea Tanzer, Julien Lagarde, Chris Zaleski, Lei-Hoon See, Meagan Fastuca, Jorg Drenkow, Huaien Wang, Giovanni Bussotti, Baikang Pei, Suganthi Balasubramanian, Jean Monlong, Arif Harmanci, Mark Gerstein, Michael A Beer, Cedric Notredame, Roderic Guigo, Thomas R Gingeras
10.1101/010884 — Posted: 2014-10-30
Genome-wide comparative analysis reveals human- mouse regulatory landscape and evolution
Olgert Denas, Richard Sandstrom, Yong Cheng, Kathryn Beal, Javier Herrero, Ross Hardison, James Taylor
10.1101/010926 — Posted: 2014-10-30
Flexible analysis of transcriptome assemblies with Ballgown
Alyssa C Frazee, Geo Pertea, Andrew E Jaffe, Ben Langmead, Steven L Salzberg, Jeffrey T Leek
10.1101/003665 — Posted: 2014-09-05
Lighter: fast and memory-efficient error correction without counting
Li Song, Liliana Florea, Ben Langmead
10.1101/005579 — Posted: 2014-08-07

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