Channel:  Johns Hopkins University

This collection includes bioRxiv and medRxiv papers from authors at Johns Hopkins University.

5854 Articles

Correspondence between resting state activity and brain gene expression
Guang-Zhong Wang, T. Grant Belgard, Deng Mao, Leslie Chen, Stefano Berto, Todd Preuss, Hanzhang Lu, Daniel Geschwind, Genevieve Konopka
10.1101/021071 — Posted: 2015-07-10
SubClonal Hierarchy Inference from Somatic Mutations: automatic reconstruction of cancer evolutionary trees from multi-region next generation sequencing
Noushin Niknafs, Violeta Beleva Guthrie, Daniel Q Naiman, Rachel Karchin
10.1101/011833 — Posted: 2015-07-01
PIK3CA Mutational Analysis in Formalin-Fixed, Paraffin-Embedded Archival Tissues of Urothelial Carcinoma of Urinary Bladder
Alcides Chaux, Julie S. Cohen, Luciana Schultz, Roula Albadine, Sana Jadallah, Kathleen M. Murphy, Diana Teheri, Mark P. Schoenberg, George J. Netto
10.1101/020263 — Posted: 2015-06-16
Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data
Jean-Philippe Fortin, Kasper D Hansen
10.1101/019000 — Posted: 2015-06-03
Sharing and specificity of co-expression networks across 35 human tissues
Emma Pierson, GTEx Consortium, Daphne Koller, Alexis Battle, Sara Mostafavi
10.1101/010843 — Posted: 2015-05-08
Building Genomic Analysis Pipelines in a Hackathon Setting with Bioinformatician Teams: DNA-seq, Epigenomics, Metagenomics and RNA-seq
Ben Busby, Allissa Dillman, Claire L. Simpson, Ian Fingerman, Sijung Yun, David M. Kristensen, Lisa Federer, Naisha Shah, Matthew C. LaFave, Laura Jimenez-Barron, Manusha Pande, Wen Luo, Brendan Miller, Cem Mayden, Dhruva Chandramohan, Kipper Fletez-Brant, Paul W. Bible, Sergej Nowoshilow, Alfred Chan, Eric JC Galvez, Jeremy Chignell, Joseph N. Paulson, Manoj Kandpal, Suhyeon Yoon, Esther Asaki, Abhinav Nellore, Adam Stine, Robert Sanders, Jesse Becker, Matt Lesko, Mordechai Abzug, Eugene Yaschenko
10.1101/018085 — Posted: 2015-05-05
Designing and interpreting limiting dilution assays: general principles and applications to the latent reservoir for HIV-1
Daniel I S Rosenbloom, Oliver Elliott, Alison L Hill, Timothy J Henrich, Janet M Siliciano, Robert F Siliciano
10.1101/018911 — Posted: 2015-05-03
Big city, small world: Density, contact rates, and transmission of dengue across Pakistan.
Moritz U. G. Kraemer, T. Alex Perkins, Derek A.T. Cummings, Rubeena Zakar, Simon I. Hay, David L. Smith, Robert C. Reiner
10.1101/018481 — Posted: 2015-04-27
Proteins linked to autosomal dominant and autosomal recessive disorders harbor characteristic rare missense mutation distribution patterns
Tychele Turner, Christopher Douville, Dewey Kim, Peter D Stenson, David N Cooper, Aravinda Chakravarti, Rachel Karchin
10.1101/018648 — Posted: 2015-04-27
Choosing subsamples for sequencing studies by minimizing the average distance to the closest leaf
Jonathan T. L. Kang, Peng Zhang, Sebastian Zöllner, Noah A. Rosenberg
10.1101/017822 — Posted: 2015-04-09

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