Channel: Johns Hopkins University

This collection includes bioRxiv and medRxiv papers from authors at Johns Hopkins University.

5867 Articles

Genome-wide comparative analysis reveals human- mouse regulatory landscape and evolution

Olgert Denas, Richard Sandstrom, Yong Cheng, Kathryn Beal, Javier Herrero, Ross Hardison, James Taylor

10.1101/010926 — Posted: 2014-10-30

Flexible analysis of transcriptome assemblies with Ballgown

Alyssa C Frazee, Geo Pertea, Andrew E Jaffe, Ben Langmead, Steven L Salzberg, Jeffrey T Leek

10.1101/003665 — Posted: 2014-09-05

Lighter: fast and memory-efficient error correction without counting

Li Song, Liliana Florea, Ben Langmead

10.1101/005579 — Posted: 2014-08-07

Faster sequence alignment through GPU-accelerated restriction of the seed-and-extend search space

Richard Wilton, Tamas Budavari, Ben Langmead, Sarah J Wheelan, Steven Salzberg, Alex Szalay

10.1101/007641 — Posted: 2014-08-01

Avoiding test set bias with rank-based prediction

Prasad Patil, Peirre-Olivier Bachant-Winner, Benjamin Haibe-Kains, Jeffrey T Leek

10.1101/005983 — Posted: 2014-06-06

IVT-seq reveals extreme bias in RNA-sequencing

Nicholas F Lahens, Ibrahim Halil Kavakli, Ray Zhang, Katharina Hayer, Michael B Black, Hannah Dueck, Angel Pizarro, Junhyong Kim, Rafael A Irizarry, Russell S Thomas, Gregory R Grant, John B Hogenesch

10.1101/005371 — Posted: 2014-05-21

Functional normalization of 450k methylation array data improves replication in large cancer studies

Jean-Philippe Fortin, Aurelie Labbe, Mathieu Lemire, Brent W. Zanke, Thomas J. Hudson, Elana J. Fertig, Celia M.T. Greenwood, Kasper D. Hansen

10.1101/002956 — Posted: 2014-02-23

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