Channel: Johns Hopkins University

This collection includes bioRxiv and medRxiv papers from authors at Johns Hopkins University.

5692 Articles

Local genetic effects on gene expression across 44 human tissues

Francois Aguet, Andrew A Brown, Stephane Castel, Joe R Davis, Pejman Mohammadi, Ayellet V Segre, Zachary Zappala, Nathan S Abell, Laure Fresard, Eric R Gamazon, Ellen Gelfand, Machael J Gloudemans, Yuan He, Farhad Hormozdiari, Xiao Li, Xin Li, Boxiang Liu, Diego Garrido-Martin, Halit Ongen, John J Palowitch, YoSon Park, Christine B Peterson, Gerald Quon, Stephan Ripke, Andrey A Shabalin, Tyler C Shimko, Benjamin J Strober, Timothy J Sullivan, Nicole A Teran, Emily K Tsang, Hailei Zhang, Yi-Hui Zhou, Alexis Battle, Carlos D Bustamonte, Nancy J Cox, Barbara E Engelhardt, Eleazar Eskin, Gad Getz, Manolis Kellis, Gen Li, Daniel G MacArt

10.1101/074450 — Posted: 2016-09-09

Spatial patterning of P granules by RNA-induced phase separation of the intrinsically-disordered protein MEG-3

Jarrett Smith, Deepika Calidas, Helen Schmidt, Tu Lu, Dominique Rasoloson, Geraldine Seydoux

10.1101/073908 — Posted: 2016-09-07

Computational Pan-Genomics: Status, Promises and Challenges

Tobias Marschall, Manja Marz, Thomas Abeel, Louis Dijkstra, Bas E Dutilh, Ali Ghaffaari, Paul Kersey, Wigard Kloosterman, Veli Makinen, Adam Novak, Benedict Paten, David Porubsky, Eric RIVALS, Can Alkan, Jasmijn Baaijens, Paul I. W. de Bakker, Valentina Boeva, Raoul J.P. Bonnal, Francesca Chiaromonte, Rayan Chikhi, Francesca D. Ciccarelli, Robin Cijvat, Erwin Datema, Cornelia M. Van Duijn, Evan E. Eichler, Corinna Ernst, Eleazar Eskin, Erik Garrison, Mohammed El-Kebir, Gunnar W. Klau, Jan O Korbel, Eric-Wubbo Lameijer, Ben Langmead, Marcel Martin, Paul Medvedev, John C. Mu, Pieter Neerincx, Klaasjan Ouwens, Pierre Peterlongo, Pisan

10.1101/043430 — Posted: 2016-08-25

Molecular signatures associated with ZIKV exposure in human cortical neural progenitors

Feiran Zhang, Christy Hammack, Sarah Ogden, Yichen Cheng, Emily Lee, Zhexing Wen, Xuyu Qian, Ha Nam Nguyen, Yujing Li, Bing Yao, Miao Xu, Tianlei Xu, Li Chen, Zhiqin Wang, Hao Feng, Wei-Kai Huang, Ki-jun Yoon, Chao Shan, Pei-Yong Shi, Luxoiu Huang, Zhaohui Qin, Kimberly Christian, Mingjiang Xu, Menghang Xia, Wei Zheng, Hao Wu, Hongjun Song, Hengli Tang, Guo-li Ming, Peng Jin

10.1101/071183 — Posted: 2016-08-23

Modeling and docking antibody structures with Rosetta

Brian D. Weitzner, Jeliazko Jeliazkov, Sergey Lyskov, Nicholas A Marze, Daisuke Kuroda, Rahel Frick, Naireeta Biswas, Jeffrey J Gray

10.1101/069930 — Posted: 2016-08-16

Molecular mechanisms of substrate-controlled ring dynamics and sub-stepping in a nucleic-acid dependent hexameric motor

Nathan D. Thomsen, Michael R. Lawson, Lea B. Witkowsky, Song Qu, James M. Berger

10.1101/069559 — Posted: 2016-08-16

Ligand-induced and small molecule control of substrate loading in a hexameric helicase

Michael R. Lawson, Kevin Dyer, James M. Berger

10.1101/069773 — Posted: 2016-08-16

Exaggerated CpH Methylation in the Autism-Affected Brain

Shannon E Ellis, Simone Gupta, Anna Moes, Andrew B West, Dan E Arking

10.1101/069120 — Posted: 2016-08-15

recount: A large-scale resource of analysis-ready RNA-seq expression data

Leonardo Collado-Torres, Abhinav Nellore, Kai Kammers, Shannon E Ellis, Margaret A Taub, Kasper D Hansen, Andrew E Jaffe, Ben Langmead, Jeffrey Leek

10.1101/068478 — Posted: 2016-08-08

Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the mega-reads algorithm

Aleksey V Zimin, Daniela Puiu, Ming-Cheng Luo, Tingting Zhu, Sergey Koren, James A. Yorke, Jan Dvorak, Steven Salzberg

10.1101/066100 — Posted: 2016-07-26

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