Channel: Johns Hopkins University

This collection includes bioRxiv and medRxiv papers from authors at Johns Hopkins University.

5648 Articles

Enhanced Transcriptome Maps from Multiple Mouse Tissues Reveal Evolutionary Constraint in Gene Expression for Thousands of Genes

Dmitri Pervouchine, Sarah Djebali, Alessandra Breschi, Carrie A Davis, Pablo Prieto Barja, Alex Dobin, Andrea Tanzer, Julien Lagarde, Chris Zaleski, Lei-Hoon See, Meagan Fastuca, Jorg Drenkow, Huaien Wang, Giovanni Bussotti, Baikang Pei, Suganthi Balasubramanian, Jean Monlong, Arif Harmanci, Mark Gerstein, Michael A Beer, Cedric Notredame, Roderic Guigo, Thomas R Gingeras

10.1101/010884 — Posted: 2014-10-30

Genome-wide comparative analysis reveals human- mouse regulatory landscape and evolution

Olgert Denas, Richard Sandstrom, Yong Cheng, Kathryn Beal, Javier Herrero, Ross Hardison, James Taylor

10.1101/010926 — Posted: 2014-10-30

Flexible analysis of transcriptome assemblies with Ballgown

Alyssa C Frazee, Geo Pertea, Andrew E Jaffe, Ben Langmead, Steven L Salzberg, Jeffrey T Leek

10.1101/003665 — Posted: 2014-09-05

Lighter: fast and memory-efficient error correction without counting

Li Song, Liliana Florea, Ben Langmead

10.1101/005579 — Posted: 2014-08-07

Faster sequence alignment through GPU-accelerated restriction of the seed-and-extend search space

Richard Wilton, Tamas Budavari, Ben Langmead, Sarah J Wheelan, Steven Salzberg, Alex Szalay

10.1101/007641 — Posted: 2014-08-01

Avoiding test set bias with rank-based prediction

Prasad Patil, Peirre-Olivier Bachant-Winner, Benjamin Haibe-Kains, Jeffrey T Leek

10.1101/005983 — Posted: 2014-06-06

IVT-seq reveals extreme bias in RNA-sequencing

Nicholas F Lahens, Ibrahim Halil Kavakli, Ray Zhang, Katharina Hayer, Michael B Black, Hannah Dueck, Angel Pizarro, Junhyong Kim, Rafael A Irizarry, Russell S Thomas, Gregory R Grant, John B Hogenesch

10.1101/005371 — Posted: 2014-05-21

Functional normalization of 450k methylation array data improves replication in large cancer studies

Jean-Philippe Fortin, Aurelie Labbe, Mathieu Lemire, Brent W. Zanke, Thomas J. Hudson, Elana J. Fertig, Celia M.T. Greenwood, Kasper D. Hansen

10.1101/002956 — Posted: 2014-02-23

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