Channel: University of California, San Diego

This collection includes bioRxiv and medRxiv papers from authors at University of California, San Diego.

4363 Articles

A metabolic atlas of the Klebsiella pneumoniae species complex reveals lineage-specific metabolism that supports co-existence of diverse lineages

Vezina, B., Cooper, H. B., Rethoret-Pasty, M., Brisse, S., Monk, J. M., Holt, K. E., Wyres, K. L.

10.1101/2024.07.24.605038 — Posted: 2025-02-28

Towards Scalable Biomarker Discovery in Posttraumatic Stress Disorder: Triangulating Genomic and Phenotypic Evidence from a Health System Biobank

Lee, Y. H., Zhang, Y., Espinosa Dice, A. L., Li, J. H., Tubbs, J. D., Feng, Y.-C. A., Ge, T., Maihofer, A. X., Nievergelt, C. M., Smoller, J. W., Koenen, K. C., Roberts, A. L., Slopen, N.

10.1101/2025.02.27.25322886 — Posted: 2025-02-28

Epigenetic entropy, social disparity, and health and lifespan in the Women's Health Initiative

Mozhui, K., Starlard-Davenport, A., Sun, Y., Shadyab, A. H., Casanova, R., Thomas, F., Wallace, R. W., Fowke, J. H., Johnson, K. C.

10.1101/2025.02.21.25322696 — Posted: 2025-02-26

WITHDRAWN: Filovirus outbreak responses and occupational health effects of chlorine spraying in healthcare workers: a systematic review and meta-analysis of alternative disinfectants and application methods

Fontana, L., Stabile, L., Caracci, E., Chaillon, A., Ait-Ikhlefk, K., Buonanno, G.

10.1101/2024.09.18.24313940 — Posted: 2025-02-24

Individuals with Methamphetamine Use Disorder Show Reduced Directed Exploration and Learning Rates Independent of an Aversive Interoceptive State Induction

Goldman, C. M., Takahashi, T., Lavalley, C. A., Li, N., Taylor, S., Chuning, A. E., Hodson, R., Stewart, J. L., Wilson, R. C., Khalsa, S. S., Paulus, M. P., Smith, R.

10.1101/2024.05.17.24307491 — Posted: 2025-02-24

Trajectories of microbiome-derived bile acids in early life - Insights into the progression to islet autoimmunity

Lamichhane, S., Dickens, A. M., Buchacher, T., Tianai Lou, E., Charron Lamoureux, V., Kattelus, R., Karmacharya, P., Pinto da Silva, L., Krakstrom, M., Rasool, O., Sen, P., Walker, C., Gentry, E. C., Patan, A., Arzoomand, A., Lakshmikanth, T., Mikes, J., Mebrahtu, A., Vatanen, T., Raffatellu, M., Zengler, K., HyOtylainen, T., Xavier, R. J., Brodin, P., Lahesmaa, R., Dorrestein, P. C., Knip, M., Oresic, M.

10.1101/2025.02.18.25322275 — Posted: 2025-02-24

Synergistic RAS-MAPK and AKT Activation in MYC-Driven Tumors via Adjacent PVT1 Rearrangements

Tiwari, A., Paithane, U., Friedlein, J., Tashiro, K., Saulnier, O., Barbosa, K. O., Trinh, Q., Hall, B., Saha, S., Soni, A., Nakashima, T., Bobkov, A. A., Fujimoto, L. M., Murad, R., Maurya, S., Saraswat, M., Sarmashghi, S., Lange, J. T., Wu, S., Masihi, M. B., Ghosh, S., Hemmati, G., Chapman, O. S., Hendrikse, L. D., James, B., Luebeck, J.-C., Eisemann, T., Tzaridis, T., Rohila, D., Leary, R., Varshney, J., Konety, B., Dehm, S. M., Kawakami, Y., Beroukhim, R., Largaespada, D., Stein, L. D., Chavez, L., Suzuki, H., Weiss, W. A., Zhao, J., Deshpande, A., Wechsler-Reya, R. J., Taylor, M. D., Bag

10.1101/2025.02.17.638454 — Posted: 2025-02-22

Geographic and age-related variations in mutational processes in colorectal cancer

Diaz-Gay, M., dos Santos, W., Moody, S., Kazachkova, M., Abbasi, A., Steele, C. D., Vangara, R., Senkin, S., Wang, J., Fitzgerald, S., Bergstrom, E. N., Khandekar, A., Otlu, B., Abedi-Ardekani, B., de Carvalho, A. C., Cattiaux, T., Penha, R. C. C., Gaborieau, V., Chopard, P., Carreira, C., Cheema, S., Latimer, C., Teague, J., Mukeriya, A., Zaridze, D., Cox, R., Albert, M., Phouthavongsy, L., Gallinger, S., Malekzadeh, R., Niavarani, A., Miladinov, M., Eric, K., Milosavljevic, S., Sangrajrang, S., Curado, M. P., Aguiar, S., Reis, R. M., dos Reis, M. T., Romagnolo, L. G., Guimaraes, D. P., Holca

10.1101/2025.02.13.25322219 — Posted: 2025-02-21

Species tree branch length estimation despite incomplete lineage sorting, duplication, and loss

Tabatabaee, Y., Zhang, C., Arasti, S., Mirarab, S.

10.1101/2025.02.20.639320 — Posted: 2025-02-21

Planar cell polarity coordination in a cnidarian embryo provides clues to animal body axis evolution

Uveira, J., Donati, A., Leria, M., Lechable, M., Lahaye, F., Vesque, C., Houliston, E., Momose, T.

10.1101/2024.09.05.609312 — Posted: 2025-02-20

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