Channel: University of California, Berkeley

This collection includes bioRxiv and medRxiv papers from authors at University of California, Berkeley.

4339 Articles

Latent activity in TnpB revealed by mutational scanning

Thornton, B. W.-L., Weissman, R. F., Tran, R. V., Duong, B. T., Rodriguez, J. E., Terrace, C. I., Groover, E. D., Park, J.-U., Tartaglia, J., Doudna, J. A., Savage, D.

10.1101/2025.02.11.637750 — Posted: 2025-09-15

Estimating Historical Food Web Variation in Chesapeake Bay Using Isotope Variation in Museum Fish Specimens

Schumm, M. P., Bemis, K. E., Parenti, L. R., Okamoto, D. K.

10.1101/2025.09.09.674953 — Posted: 2025-09-15

Active learning enables discovery of transcriptional activators across fungal evolutionary space

Waldburger, L., Nisonoff, H., Zintel, M., Kirkpatrick, L. D., Lam, A., Lanclos, N., Keasling, J. D., Staller, M. V., Shih, P. M.

10.1101/2025.09.12.675635 — Posted: 2025-09-14

Write and Read: Harnessing Synthetic DNA Modifications for Nanopore Sequencing

Bertocchi, U., Grunwald, A., Goldner, G., Eitan, E., Avraham, S., Dvir, S., Deek, J., Michaeli, Y., Yao, B., Listgarten, J., Simpson, J. T., Timp, W., Ebenstein, Y.

10.1101/2025.04.14.648727 — Posted: 2025-09-13

CRISPR epi-editing reveals regulatory crosstalk between alternative promoters and splicing in Neurexin isoform expression

Hsiao, Y. Y., Gomez, A. M.

10.1101/2025.09.10.675405 — Posted: 2025-09-13

Distinct Implicit Contributions to Action Selection and Action Execution in Sensorimotor Adaptation

Wang, T., Lam, T., Taylor, J. A., Ivry, R. B.

10.1101/2025.09.12.675892 — Posted: 2025-09-13

The prevalence of two known pathogens of Atlantic Blue Crab Callinectes sapidus (Rathbun, 1896) in coastal Adriatic, Aegean sea, and Atlantic Iberian coast

Schott, E., Scepanovic, M. B., Lucic, J. M., Pares, O., Zhao, M., Hrabar, J., Glamuzina, L., Pecarevic, M., Grdan, S., Encarnacao, J. P. d. S., Morais, P., Cetkovic, I., Glamuzina, B.

10.1101/2025.02.14.637520 — Posted: 2025-09-13

CytoVI: Deep generative modeling of antibody-based single cell technologies

Ingelfinger, F., Levy, N., Ergen, C., Bakulin, A., Becker, A., Boyeau, P., Kim, M., Ditz, D., Dirks, J., Maaskola, J., Wertheimer, T., Zeiser, R., Widmer, C. C., Amit, I., Yosef, N.

10.1101/2025.09.07.674699 — Posted: 2025-09-12

Comparing Missing Data Imputation Methods for Patient-Reported Outcomes in Esophageal Cancer Research

Kweon, Y. J., Salman, Y., Dhillon, S., Dehghani, M., Mohammed, E. A., Crump, R. T.

10.1101/2025.09.10.25335531 — Posted: 2025-09-12

Computed Tomography Orodental Sub-volume Imaging Annotation Dataset of Head and Neck Cancer Radiation Therapy Patients

Kaffey, Z., OPC-SURVIVOR Program and MD Anderson Head and Neck Cancer Symptom Working Group, , Castelo, A. H., He, R., van Dijk, L. V., Rhee, D. J., Wang, C., Wang, H. C., Wahid, K. A., Joshi, S., Gerafian, P., West, N., Mirbahaeddin, S., Curiel, J., Acharya, S., Shekha, A., Oderinde, P., Ali, A. M. S., Hope, A., Watson, E., Wesson-Aponte, R., Frank, S. J., Barbon, C. E. A., Brock, K. K., Chambers, M. S., Walji, M., Hutcheson, K. A., Lai, S. Y., Fuller, C. D., Naser, M. A., Moreno, A. C., Humbert-Vidan, L.

10.1101/2025.09.09.25333678 — Posted: 2025-09-12

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