bioRxiv/medRxiv TRiP Review Activity

528 Reviews — All Partners — Bioinformatics

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Celldetective: an AI-enhanced image analysis toolfor unraveling dynamic cell interactions
Torro, R., Diaz Bello, B., El Arawi, D., Ammer, L., Chames, P., Sengupta, K., Limozin, L.
10.1101/2024.03.15.585250 — Posted: 2024-03-17 — Discussion: 2026-06-16  eLife
Accelerating k-mer-based sequence filtering
Martayan, I., Vandamme, L., Constantinides, B., Cazaux, B., Paperman, C., Limasset, A.
10.1101/2025.06.16.659853 — Posted: 2025-06-20 — Discussion: 2026-06-11  Peer Community In
coelsch: Platform-agnostic single-cell analysis of meiotic recombination events
Parker, M. T., Amar, S., Freudigmann, J., Walkemeier, B., Dong, X., Solier, V., Marek, M., Huettel, B., Mercier, R., Schneeberger, K.
10.64898/2026.02.02.701279 — Posted: 2026-02-04 — Discussion: 2026-06-11  Review Commons
Modelling multicellular coordination by bridging cell-cell communication and intracellular regulation through multilayer networks
Trimbour, R., Ramirez Flores, R. O., Saez-Rodriguez, J., Cantini, L.
10.64898/2026.01.20.700561 — Posted: 2026-01-22 — Discussion: 2026-05-27  Review Commons
A comprehensive dimensional reduction framework to learn single-cell phenotypic topology uncovers T cell diversity
Sidarta-Oliveira, D., Velloso, L. A.
10.1101/2022.03.14.484134 — Posted: 2022-03-17 — Discussion: 2026-05-22  eLife
ProteinConformers: large-scale and energetically profiled descriptions of protein conformational landscapes
Zhou, Y., Wei, C., Sun, M., Wang, L., Song, J., Xu, F., Li, Y., Zheng, W., Zhang, Y.
10.64898/2026.02.20.707011 — Posted: 2026-02-20 — Discussion: 2026-05-13  eLife
Establishing benchmarks for quantitative mapping of m6A by Nanopore Direct RNA Sequencing
Ohnezeit, D., Loliashvili, E., Putzel, G., Verstraten, R., Liu, J., Nicholson, L. S., Pironti, A., Jaffrey, S. R., Depledge, D. P., Wilson, A. C.
10.1101/2025.11.02.686099 — Posted: 2025-11-02 — Discussion: 2026-05-05  eLife
Sample-level modeling of single-cell data at scale with tinydenseR
Milanez-Almeida, P., Schildknecht, D., Linder, M., Brachmann, S. M., Weiss, A., Adler, F., Lenticchia, S. C., Meistertzheim, M., Wild, S., Cuttat, R., Jayaraman, P., Lee, L. H., Mulvey, T., Hassounah, N., Crafts, G., Quinn, D. S., Orlando, E. J.
10.1101/2025.11.26.690752 — Posted: 2025-11-30 — Discussion: 2026-05-05  Review Commons
HVRLocator: A Computationally Efficient Tool for Identifying Hypervariable Regions in 16S rRNA Big Datasets
Arboleda-Baena, C., Borim Correa, F., Saraiva, J. P., Castillo, S., Kasmanas, J. C., Chatzinotas, A., Jurburg, S. D.
10.1101/2025.07.24.666487 — Posted: 2025-07-29 — Discussion: 2026-04-28  GigaScience
scfetch: an R package to access and format single-cell RNA sequencing datasets from public repositories
Song, Y., Gao, J., Wang, J.
10.1101/2023.11.18.567507 — Posted: 2023-11-20 — Discussion: 2026-04-28  GigaScience

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