bioRxiv/medRxiv TRiP Review Activity

487 Reviews — All Partners — Bioinformatics

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Improving the Reliability and Quality of Nextflow Pipelines with nf-test
Forer, L., Schoenherr, S.
10.1101/2024.05.25.595877 — Posted: 2024-05-30 — Discussion: 2025-10-30  GigaScience
EssSubgraph improves performance and generalizability of mammalian essential gene prediction with large networks
wen, h., Carpenter, S., McGinnis, K., Nelson, A., Smith, K., hong, t.
10.1101/2025.07.21.665218 — Posted: 2025-07-25 — Discussion: 2025-10-30  GigaScience
GTestimate: Improving relative gene expression estimation in scRNA-seq using the Good-Turing estimator
Fahrenberger, M., Esk, C., von Haeseler, A.
10.1101/2024.07.02.601501 — Posted: 2024-07-03 — Discussion: 2025-10-30  GigaScience
The enduring advantages of the SLOW5 file format for raw nanopore sequencing data
Gamaarachchi, H., Jenner, S., Samarakoon, H., Ferguson, J. M., Deveson, I. W.
10.1101/2025.06.30.662478 — Posted: 2025-07-04 — Discussion: 2025-10-30  GigaScience
GFFx: A Rust-based suite of utilities for ultra-fast genomic feature extraction
Chen, B., Dongya, W., Zhang, G.
10.1101/2025.08.08.669426 — Posted: 2025-08-12 — Discussion: 2025-10-30  GigaScience
Reproducible processing of TCGA regulatory networks
Fanfani, V., Shutta, K. H., Mandros, P., Fischer, J., Saha, E., Micheletti, S., Chen, C., Ben Guebila, M., Lopes-Ramos, C. M., Quackenbush, J.
10.1101/2024.11.05.622163 — Posted: 2024-11-07 — Discussion: 2025-10-30  GigaScience
Artificial Intelligence uncovers Evolutionarily Conserved Intracellular Allosteric Modulators of GPCR-Gα interface.
Mohanty, S. K., Mittal, A., Gaur, A., Solanki, S., Kumar, S., Duari, S., Arora, S., Gautam, V., Dixit, N. K., Ghosh, T. S., Sengupta, D., Gupta, S. K., Murugan, N. A., Ahuja, G.
10.1101/2023.02.14.528587 — Posted: 2023-02-15 — Discussion: 2025-10-29  eLife
Deep learning versus geometric morphometrics for archaeobotanical domestication study and subspecific identification
Bonhomme, V., Bouby, L., Claude, J., Dham, C., Gros-Balthazard, M., Ivorra, S., Jeanty, A., Pagnoux, C., Pastor, T., Terral, J.-F., Evin, A.
10.1101/2023.09.15.557939 — Posted: 2023-09-15 — Discussion: 2025-10-23  Peer Community In
Subtle methodological variations substantially impact correlation test results in ecological time series
Cannistra, C., Hoang, L., Yuan, A. E., Shou, W.
10.1101/2024.10.11.617506 — Posted: 2024-10-15 — Discussion: 2025-10-21  eLife
Decoding molecular mechanisms for loss of function variants in the human proteome
Cagiada, M., Jonsson, N., Lindorff-Larsen, K.
10.1101/2024.05.21.595203 — Posted: 2024-05-22 — Discussion: 2025-10-20  eLife

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