bioRxiv/medRxiv TRiP Review Activity

553 Reviews — All Partners — Bioinformatics

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Establishing benchmarks for quantitative mapping of m6A by Nanopore Direct RNA Sequencing
Ohnezeit, D., Loliashvili, E., Putzel, G., Verstraten, R., Liu, J., Nicholson, L. S., Pironti, A., Jaffrey, S. R., Depledge, D. P., Wilson, A. C.
10.1101/2025.11.02.686099 — Posted: 2025-11-02 — Discussion: 2026-10-29  eLife
Bacterial metagenome in plaque, saliva, and tumor samples from individuals with and without OSCC by next-generation sequencing
ERIRA, A., ROBAYO, D. A. G., GAMBOA, F., CHALA, A., MORENO, A., ARREGUI, A. C., MUNOZ, E., NOGUERA, J., TOBAR-TOSSE, F.
10.64898/2026.08.27.747557 — Posted: 2026-08-29 — Discussion: 2026-10-27  Gigabyte
Singe cell RNA sequencing data processing using cloud-based serverless computing
Hung, L.-H., Nasam, N., Lloyd, W., Yeung, K. Y.
10.1101/2025.04.26.650787 — Posted: 2025-04-30 — Discussion: 2026-10-27  Gigabyte
Poly Pipeline: A Polyvalent Spatial Transcriptomics Workflow Validated Across Polyploid and Diploid Organisms
Carvalho, P. C., Millsteed, T., Henry, R. J.
10.64898/2026.08.31.748304 — Posted: 2026-09-04 — Discussion: 2026-10-27  Gigabyte
Penumbria: Advanced 3D cell segmentation for biomedical imaging
Stockert, L., Donovan, J., Baier, H.
10.64898/2026.06.30.735527 — Posted: 2026-07-01 — Discussion: 2026-10-12  eLife
Large scale loss-of-function mutations during chicken evolution and domestication
Wu, S., Wang, K., Ge, X., Dou, T., Yuan, S., Yan, S., Xu, Z., Liu, Y., Jian, Z., Zhao, J., Zhao, R., Zi, X., Gu, D., Liu, L., Li, Q., Wu, D.-D., Jia, J., Ge, C., Su, Z.
10.1101/2024.05.21.595210 — Posted: 2024-05-22 — Discussion: 2026-10-06  eLife
A pocket-centric framework for selective targeting of amyloid fibril polymorphs
Ossard, G., Ciambur, C. B., Melki, R., Sperandio, O., Romero, E.
10.64898/2026.02.25.707901 — Posted: 2026-02-26 — Discussion: 2026-09-17  Review Commons
ProteinConformers: large-scale and energetically profiled descriptions of protein conformational landscapes
Zhou, Y., Wei, C., Sun, M., Wang, L., Song, J., Xu, F., Li, Y., Zheng, W., Zhang, Y.
10.64898/2026.02.20.707011 — Posted: 2026-02-20 — Discussion: 2026-09-15  eLife
NetSyn: genomic context exploration of protein families
Stam, M., Langlois, j., Chevalier, C., Reboul, G., Bastard, K., Medigue, C., Vallenet, D.
10.1101/2023.02.15.528638 — Posted: 2023-02-15 — Discussion: 2026-09-09  Peer Community In
The structural context of mutations in proteins predicts their effect on antibiotic resistance
Green, A. G., Tasmin, M., Vargas, R., Farhat, M. R.
10.1101/2025.09.23.676583 — Posted: 2025-09-25 — Discussion: 2026-09-01  eLife

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