bioRxiv/medRxiv TRiP Review Activity

450 Reviews — All Partners — Genomics

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Post-fertilization transcription initiation in an ancestral LTR retrotransposon drives lineage-specific genomic imprinting of ZDBF2
Kobayashi, H., Igaki, T., Kumamoto, S., Tanaka, K., Takashima, T., Suzuki, S., Hayashi, M., Renfree, M. B., Kawahara, M., Saito, S., Kobayashi, T., Nagashima, H., Nakano, K., Matsunari, H., Uchikura, A., Kiyonari, H., Kaneko, M., Imai, H., Nakabayashi, K., Lorincz, M. C., Kurimoto, K.
10.1101/2023.10.30.564869 — Posted: 2023-11-02 — Discussion: 2025-05-12  eLife
Transcription can be sufficient, but is not necessary, to advance replication timing
Vouzas, A., Sasaki, T., Rivera-Mulia, J. C., Turner, J. L., Brown, A. N., Alexander, K. E., Brueckner, L., van Steensel, B., Gilbert, D. M.
10.1101/2025.02.04.636516 — Posted: 2025-02-05 — Discussion: 2025-05-06  Review Commons
OTX2 controls chromatin accessibility to direct somatic versus germline differentiation
Barbieri, E., Chambers, I.
10.1101/2025.02.18.638827 — Posted: 2025-02-18 — Discussion: 2025-05-06  Review Commons
Comparison of whole-genome assemblies of European river lamprey (Lampetra fluviatilis) and brook lamprey (Lampetra planeri)
Torresen, O. K., Garmann-Aarhus, B., Hoff, S. N. K., Jentoft, S., Svensson, M., Schartum, E., Tooming-Klunderud, A., Skage, M., Krabberod, A., Vollestad, L. A., Jakobsen, K. S.
10.1101/2024.12.06.627158 — Posted: 2024-12-10 — Discussion: 2025-05-06  Peer Community In
Natural variation in chalcone isomerase defines a major locus controlling growth variation between Populus nigra populations
Durufle, H., Dejardin, A., Jorge, V., Pegard, M., Pilate, G., Rogier, O., Sanchez, L., Segura, V.
10.1101/2024.10.21.618920 — Posted: 2024-10-24 — Discussion: 2025-04-30  Peer Community In
Efficiently Constructing Complete Genomes with CycloneSEQ to Fill Gaps in Bacterial Draft Assemblies
Liang, H., Wang, M., Hu, T., Wang, H., He, W., Ju, Y., Guo, R., Chen, J., Guo, F., Zeng, T., Dong, Y., Wang, B., Liu, C., Jin, X., Zhang, W., Zou, Y., Xu, X., Xiao, L.
10.1101/2024.09.05.611410 — Posted: 2024-09-07 — Discussion: 2025-04-28  Gigabyte
Single cell transcriptomics of X-ray irradiated Drosophila wing discs reveals heterogeneity related to cell-cycle status and cell location
Cruz, J., Sun, W. Y., Verbeke, A., Hariharan, I. K.
10.1101/2024.12.10.627868 — Posted: 2024-12-12 — Discussion: 2025-04-22  eLife
Convergent evolution of epigenome recruited DNA repair across the Tree of Life
Monroe, G., Lee, C., Quiroz, D. P., Lensink, M., Oya, S., Davis, M., Long, E., Bird, K. A., Pierce, A. V., Zhao, K., Runcie, D. E.
10.1101/2024.10.15.618488 — Posted: 2024-11-02 — Discussion: 2025-04-17  eLife
DNMT1 loss leads to hypermethylation of a subset of late replicating domains by DNMT3A
Kafetzopoulos, I., Taglini, F., Davidson-Smith, H., Sproul, D.
10.1101/2024.12.19.629414 — Posted: 2024-12-19 — Discussion: 2025-04-14  Review Commons
Genome assembly and annotation of Acropora pulchra from Mo'orea French Polynesia
Conn, T., Ashey, J., Cunning, R., Putnam, H. M.
10.1101/2025.03.27.645822 — Posted: 2025-03-28 — Discussion: 2025-04-13  Gigabyte

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