bioRxiv/medRxiv TRiP Review Activity

473 Reviews — All Partners — Genomics

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A telomere to telomere phased genome assembly and annotation for the Australian central bearded dragon Pogona vitticeps
Patel, H. R., Alreja, K., Reis, A. M., Chang, J. K., Chew, Z. A., Jung, H., Hammond, J. M., Deveson, I. W., Ruiz-Herrera, A., Marin-Gual, L., Holleley, C. E., Zhang, X., Lister, N. C., Whiteley, S. L., Xiong, L., Dissanayake, D. S. B., Waters, P. D., Georges, A.
10.1101/2025.05.01.651798 — Posted: 2025-05-02 — Discussion: 2025-08-26  GigaScience
A near-complete genome assembly of the bearded dragon Pogona vitticeps provides insights into the origin of Pogona sex chromosomes
Guo, Q., Pan, Y., Dai, W., Guo, F., Zeng, T., Chen, W., Mi, Y., Zhang, Y., Shi, S., Jiang, W., Cai, H., Wu, B., Zhou, Y., Wang, Y., Yang, C., Shi, X., Yan, X., Chen, J., Cai, C., Yang, J., Xu, X., Gu, Y., Dong, Y., Li, Q.
10.1101/2024.09.05.611321 — Posted: 2024-09-10 — Discussion: 2025-08-26  GigaScience
Functional characterization of the disease-associated CCL2 rs1024611G-rs13900T haplotype: The role of the RNA-binding protein HuR
Akhtar, F., Ruiz, J. H., Liu, Y.-G., Resendez, R. G., Feliers, D., Morales, L. D., Diaz-Badillo, A., Lehman, D. M., Arya, R., Alvarenga, J. C. L., Blangero, J., Duggirala, R., Mummidi, S.
10.1101/2023.10.31.564937 — Posted: 2023-11-02 — Discussion: 2025-08-26  eLife
DNA methylation insulates genic regions from CTCF loops near nuclear speckles
Roseman, S. A., Siegenfeld, A. P., Lee, C., Lue, N. Z., Waterbury, A. L., Liau, B. B.
10.1101/2023.07.26.550645 — Posted: 2023-07-26 — Discussion: 2025-08-06  eLife
Multiomics uncovers the epigenomic and transcriptomic response to viral and bacterial stimulation in turbot
Aramburu, O., Pardo, B. G., Rodriguez-Villamayor, P., Blanco Hortas, A., Lamas, J., Dewari, P. S., Perojil, D., Boudinot, P., Macqueen, D. J., Bouza, C., Martinez, P.
10.1101/2024.02.15.580452 — Posted: 2024-02-15 — Discussion: 2025-08-04  GigaScience
Epigenetic context predicts gene expression variation and reproductive traits across genetically identical individuals
Webster, A. K., Willis, J. H., Johnson, E., Sarkies, P., Phillips, P. C.
10.1101/2023.10.13.562270 — Posted: 2023-10-13 — Discussion: 2025-07-16  eLife
Chromosome-level genome assembly and methylome profile enables insights for the conservation of endangered loggerhead sea turtles
Yen, E. C., Gilbert, J. D., Balard, A., Taxonera, A., Fairweather, K., Ford, H. L., Thorburn, D.-M. J., Rossiter, S. J., Martin-Duran, J. M., Eizaguirre, C.
10.1101/2024.08.28.610089 — Posted: 2024-08-28 — Discussion: 2025-07-08  GigaScience
Chromosome-level reference genome for the medically important Arabian horned viper (Cerastes gasperettii)
Mochales Riano, G., Hirst, S. R., Talavera, A., Burriel-Carranza, B., Pagone, V., Estarellas, M., Busschau, T., Boissinot, S., Hogan, M. P., Tena-Garces, J., Pla, D., Calvete, J. J., Els, J., Margres, M. J., Carranza, S.
10.1101/2024.07.29.605543 — Posted: 2024-07-29 — Discussion: 2025-07-08  GigaScience
Sexual reproduction is controlled by successive transcriptomic waves in Podospora anserina
Bidard, F., Grognet, P., Lelandais, G., Imbeaud, S., Mucchielli-Giorgi, M. H., Debuchy, R., Berteaux-Lecellier, V., Malagnac, F.
10.1101/2024.12.09.627484 — Posted: 2024-12-11 — Discussion: 2025-07-04  Peer Community In
A pipeline to identify TF combinatorial binding uncovers TEAD1 as an antagonist of tissue-specific transcription factors in human organogenesis
Garcia-Mora, A., Mallen, J., Zarrineh, P., Hanley, N. A., Gerrard, D., Bobola, N.
10.1101/2023.10.05.561094 — Posted: 2023-10-07 — Discussion: 2025-06-10  eLife

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