bioRxiv/medRxiv TRiP Review Activity

436 Reviews — All Partners — Genomics

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Efficiently Constructing Complete Genomes with CycloneSEQ to Fill Gaps in Bacterial Draft Assemblies
Liang, H., Wang, M., Hu, T., Wang, H., He, W., Ju, Y., Guo, R., Chen, J., Guo, F., Zeng, T., Dong, Y., Wang, B., Liu, C., Jin, X., Zhang, W., Zou, Y., Xu, X., Xiao, L.
10.1101/2024.09.05.611410 — Posted: 2024-09-07 — Discussion: 2025-04-28  Gigabyte
Single cell transcriptomics of X-ray irradiated Drosophila wing discs reveals heterogeneity related to cell-cycle status and cell location
Cruz, J., Sun, W. Y., Verbeke, A., Hariharan, I. K.
10.1101/2024.12.10.627868 — Posted: 2024-12-12 — Discussion: 2025-04-22  eLife
Convergent evolution of epigenome recruited DNA repair across the Tree of Life
Monroe, G., Lee, C., Quiroz, D. P., Lensink, M., Oya, S., Davis, M., Long, E., Bird, K. A., Pierce, A. V., Zhao, K., Runcie, D. E.
10.1101/2024.10.15.618488 — Posted: 2024-11-02 — Discussion: 2025-04-17  eLife
DNMT1 loss leads to hypermethylation of a subset of late replicating domains by DNMT3A
Kafetzopoulos, I., Taglini, F., Davidson-Smith, H., Sproul, D.
10.1101/2024.12.19.629414 — Posted: 2024-12-19 — Discussion: 2025-04-14  Review Commons
Genome assembly and annotation of Acropora pulchra from Mo'orea French Polynesia
Conn, T., Ashey, J., Cunning, R., Putnam, H. M.
10.1101/2025.03.27.645822 — Posted: 2025-03-28 — Discussion: 2025-04-13  Gigabyte
Single-cell RNA-seq reveals trans-sialidase-like superfamily gene expression heterogeneity in Trypanosoma cruzi populations
Inchausti, L., Bilbao, L., Campo, V. A., Garat, J., Sotelo-Silveira, J., Rinaldi, G., Howick, V. M., Duhagon, M. A., G. De Gaudenzi, J., Smircich, P.
10.1101/2025.01.14.633000 — Posted: 2025-01-16 — Discussion: 2025-04-02  eLife
Pyruvate and Related Energetic Metabolites Modulate Resilience Against High Genetic Risk for Glaucoma
Li, K., Tolman, N., V. Segre, A., Stuart, K., Zeleznik, O. A., Vallabh, N. A., Hu, K., Zebardast, N., Hanyuda, A., Raita, Y., Montgomery, C., Zhang, C., Hysi, P. G., Do, R., Khawaja, A., Wiggs, J., Kang, J., John, S., Pasquale, L.
10.1101/2025.01.18.633745 — Posted: 2025-01-22 — Discussion: 2025-03-28  eLife
Hypoxia impedes differentiation of cranial neural crest cells into derivatives relevant for craniofacial development
Schmid, T., Rodrian, G., Kohler, A., Wegner, M., Goelz, L., Weider, M.
10.1101/2024.09.10.610634 — Posted: 2024-09-11 — Discussion: 2025-03-27  Review Commons
Beyond A and B Compartments: how major nuclear locales define nuclear genome organization and function
Gholamalamdari, O., van Schaik, T., Wang, Y., Kumar, P., Zhang, L., Zhang, Y., Gonzalez, G. A. H., Vouzas, A. E., Zhao, P. A., Gilbert, D. M., Ma, J., van Steensel, B., Belmont, A. S.
10.1101/2024.04.23.590809 — Posted: 2024-04-23 — Discussion: 2025-03-25  eLife
Raman spectra and gene expression correspondences reveal global stoichiometry conservation architecture in cells
Kamei, K.-i. F., Kobayashi-Kirschvink, K. J., Nozoe, T., Nakaoka, H., Umetani, M., Wakamoto, Y.
10.1101/2023.05.09.539921 — Posted: 2023-05-10 — Discussion: 2025-03-24  eLife

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