bioRxiv/medRxiv TRiP Review Activity

473 Reviews — All Partners — Genomics

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CellCover Defines Conserved Cell Types and Temporal Progression in scRNA-seq Data across Mammalian Neocortical Development
Ji, L., Wang, A., Sonthalia, S., Naiman, D. Q., Younes, L., Colantuoni, C., Geman, D.
10.1101/2023.04.06.535943 — Posted: 2023-04-07 — Discussion: 2026-01-23  eLife
Single cell transcriptomics of X-ray irradiated Drosophila wing discs reveals heterogeneity related to cell-cycle status and cell location
Cruz, J., Sun, W. Y., Verbeke, A., Hariharan, I. K.
10.1101/2024.12.10.627868 — Posted: 2024-12-12 — Discussion: 2026-01-15  eLife
Haplotype-resolved chromosome-level genome assemblies of four Diamesa species reveal the genetic basis of cold tolerance and high-altitude adaptations in arctic chironomids
Martin, S. L. F., La Torre, R., Danneels, B., Tooming-Klunderud, A., Skage, M., Kollias, S., Torresen, O. K., Falahati Anbaran, M., Stur, E., Jakobsen, K. S., Martin, M. D., Ekrem, T.
10.1101/2025.07.30.667619 — Posted: 2025-08-01 — Discussion: 2026-01-05  GigaScience
Integrating bulk and single cell RNA-seq refines transcriptomic profiles of individual C. elegans neurons
Barrett, A., Varol, E., Weinreb, A., Taylor, S. R., McWhirter, R., Cros, C., Vidal, B., Basavaraju, M., Poff, A., Tipps, J. A., Majeed, M., Wang, C., Bayer, E. A., Reilly, M., Yemini, E., Sun, H., Hobert, O., Miller, D. M., Hammarlund, M.
10.1101/2022.04.05.487209 — Posted: 2025-10-20 — Discussion: 2025-12-29  eLife
Nanopore genome skimming with Illumina polishing yields highly accurate mitogenome sequences: a case study of Niphargus amphipods
Salussolia, A., Lecoquierre, N., Stoch, F., Flot, J.-F.
10.1101/2025.09.24.678374 — Posted: 2025-09-26 — Discussion: 2025-12-19  Peer Community In
Mechanistic dissection of GRHL2 and PR transcriptional co-regulation in breast cells
Aarts, M. T., Nordin, A., Cantu, C., van Boxtel, A. L., van Amerongen, R.
10.1101/2025.09.01.673508 — Posted: 2025-09-05 — Discussion: 2025-12-08  Review Commons
Multimodal single-cell analyses reveal distinct fusion-regulated transcriptional programs in Ewing sarcoma.
Waltner, O. G., Apfelbaum, A. A., Wrenn, E. D., Bhise, S. S., Kanaan, S. B., Gladden, R. G., Mendoza, M. A., Volden, R., Kronenberg, Z., Patel, A., Dyer, M., Sarthy, J. F., Lawlor, E. R., Furlan, S. N.
10.1101/2025.06.18.660457 — Posted: 2025-06-24 — Discussion: 2025-12-05  eLife
Beyond the transcript: chromatin implications in trans-splicing in Trypanosomatids
Zambrano Siri, R. T., Beati, P., Inchausti, L., Smircich, P., Alonso, G. D., Ocampo, J.
10.1101/2025.07.08.663533 — Posted: 2025-07-11 — Discussion: 2025-12-02  Review Commons
RNA-SeqEZPZ: A Point-and-Click Pipeline for Comprehensive Transcriptomics Analysis with Interactive Visualizations
Taslim, C. R., Zhang, Y., Kendall, G. C., Theisen, E. R.
10.1101/2024.12.20.629844 — Posted: 2024-12-23 — Discussion: 2025-11-28  GigaScience
Neisseria gonorrhoeae LIN codes: a Robust, Multi-Resolution Lineage Nomenclature
Unitt, A., Krisna, M. A., Parfitt, K. M., Jolley, K. A., Maiden, M. C. J., Harrison, O. B.
10.1101/2025.03.28.646058 — Posted: 2025-04-03 — Discussion: 2025-11-27  eLife

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