bioRxiv/medRxiv TRiP Review Activity

467 Reviews — All Partners — Genomics

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RNA-SeqEZPZ: A Point-and-Click Pipeline for Comprehensive Transcriptomics Analysis with Interactive Visualizations
Taslim, C. R., Zhang, Y., Kendall, G. C., Theisen, E. R.
10.1101/2024.12.20.629844 — Posted: 2024-12-23 — Discussion: 2025-11-28  GigaScience
Neisseria gonorrhoeae LIN codes: a Robust, Multi-Resolution Lineage Nomenclature
Unitt, A., Krisna, M. A., Parfitt, K. M., Jolley, K. A., Maiden, M. C. J., Harrison, O. B.
10.1101/2025.03.28.646058 — Posted: 2025-04-03 — Discussion: 2025-11-27  eLife
Raman spectra and gene expression correspondences reveal global stoichiometry conservation architecture in cells
Kamei, K.-i. F., Kobayashi-Kirschvink, K. J., Nozoe, T., Nakaoka, H., Umetani, M., Wakamoto, Y.
10.1101/2023.05.09.539921 — Posted: 2023-05-10 — Discussion: 2025-11-26  eLife
Non-linear transcriptional responses to gradual modulation of transcription factor dosage
Domingo, J., Minaeva, M., Morris, J. A., Ziosi, M., Sanjana, N. E., Lappalainen, T.
10.1101/2024.03.01.582837 — Posted: 2024-03-04 — Discussion: 2025-11-25  eLife
Heterogeneity of Genetic Sequence within Quasi-species of Influenza Virus Revealed by Single-Molecule Sequencing
Tamao, K., Noji, H., Tabata, K. V.
10.1101/2025.06.19.658006 — Posted: 2025-06-19 — Discussion: 2025-11-24  eLife
Conservation of chromatin states and their association with transcription factors in land plants
Shukla, V., Axelsson, E., Hisanaga, T., Haseloff, J., Romani, F., Berger, F.
10.1101/2025.07.12.664529 — Posted: 2025-07-17 — Discussion: 2025-11-03  Review Commons
Genomic and epidemiologic characteristics of SARS-CoV-2 persistent infections in California, January 2021 - July 2023
Bell, J. M., Elder, J., Ryder, R., Smith, E. A., Scribner, M., Gilliam, S., Borthwick, D., Crumpler, M., Skarbinski, J., Morales, C., Wadford, D. A.
10.1101/2025.07.14.664650 — Posted: 2025-07-16 — Discussion: 2025-10-30  
TinkerHap - A Novel Read-Based Phasing Algorithm with Integrated Multi-Method Support for Enhanced Accuracy
Hartmann, U., Shaham, E., Nathan, D., Blech, I., Zeevi, D.
10.1101/2025.02.16.638517 — Posted: 2025-02-20 — Discussion: 2025-10-30  GigaScience
The genetic control of rapid genome content divergence in Arabidopsis thaliana
Fiscus, C. J., Koenig, D.
10.1101/2025.06.11.659220 — Posted: 2025-06-16 — Discussion: 2025-10-20  eLife
Comparison of Infinium MethylationEPIC v2.0 to v1.0 for human population epigenetics: considerations for addressing EPIC version differences in DNA methylation-based tools
Zhuang, B. C., Jude, M. S., Konwar, C., Ryan, C. P., Whitehead, J., Engelbrecht, H.-R., MacIsaac, J. L., Dever, K., Toan, T. K., Korinek, K., Zimmer, Z., Huffman, K. M., Lee, N. R., McDade, T. W., Kuzawa, C. W., Belsky, D. W., Kobor, M. S.
10.1101/2024.07.02.600461 — Posted: 2024-07-03 — Discussion: 2025-10-07  EMBO Press

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