bioRxiv/medRxiv TRiP Review Activity

416 Reviews — All Partners — Genomics

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Sequencing, de novo assembly of Ludwigia plastomes, and comparative analysis within the Onagraceae family
Barloy-Hubler, F., Le Gac, A.-L., Boury, C., Guichoux, E., Barloy, D. H.
10.1101/2023.10.20.563230 — Posted: 2023-10-23 — Discussion: 2025-02-26  Peer Community In
High-Resolution Genome-Wide Mapping of Chromatin Accessibility and Torsional Stress
Hall, P. M., Mayse, L. M., Bai, L., Smolka, M. B., Pugh, B. F., Wang, M. D.
10.1101/2024.10.11.617876 — Posted: 2024-10-13 — Discussion: 2025-02-14  eLife
A chromosome-level, haplotype-resolved genome assembly and annotation for the Eurasian minnow (Leuciscidae - Phoxinus phoxinus) provide evidence of haplotype diversity
Oriowo, T. O., Stange, M., Chrysostomakis, I., Martin, S., Brown, T., Winkler, S., Myers, E. W., Boehne, A., Kukowka, S.
10.1101/2023.11.30.569369 — Posted: 2023-12-01 — Discussion: 2025-02-10  GigaScience
Identifying Patient-Specific Root Causal Genes with High Throughput Perturbations
Strobl, E. V., Gamazon, E. R.
10.1101/2024.01.13.574491 — Posted: 2024-01-14 — Discussion: 2025-02-07  eLife
Mapping HIV-1 RNA Structure, Homodimers, Long-Range Interactions and persistent domains by HiCapR
Zhang, Y., Han, J., Dejian, X., Shen, W., Li, P., Lau, J. Y., Li, J., Li, L., Kudla, G., Zhao, Z.
10.1101/2024.09.03.610837 — Posted: 2024-09-07 — Discussion: 2025-02-06  eLife
Dark side of the honeymoon: reconstructing the Asian x European rose breeding history through the lens of genomics
Leroy, T., Albert, E., Thouroude, T., Baudino, S., Caissard, J.-C., Chastellier, A., Chameau, J., Jeauffre, J., Loubert, T., Paramita, S. N., Pernet, A., Soufflet-Freslon, V., Oghina-Pavie, C., Foucher, F., Oyant, L. H.-S., Clotault, J.
10.1101/2023.06.22.546162 — Posted: 2023-06-26 — Discussion: 2025-01-31  Peer Community In
Methylation Clocks Do Not Predict Age or Alzheimer's Disease Risk Across Genetically Admixed Individuals
Cruz-Gonzalez, S., Gu, E., Gomez, L., Mews, M., Vance, J. M., Cuccaro, M. L., Cornejo-Olivas, M. R., Feliciano-Astacio, B. E., Byrd, G. S., Haines, J. L., Pericak-Vance, M. A., Griswold, A. J., Bush, W. S., Capra, J. A.
10.1101/2024.10.16.618588 — Posted: 2024-10-18 — Discussion: 2025-01-30  eLife
Spatio-temporal diversity and genetic architecture of pyrantel resistance in Cylicocyclus nassatus, the most abundant horse parasite
Salle, G., Courtot, E., Cabau, C., Parrinello, H., Serreau, D., Reigner, F., Gesbert, A., Jacquinot, L., Lenhof, O., Aime, A., Picandet, V., Kuzmina, T., Holovachov, O., Bellaw, J., Nielsen, M. K., von Samson-Himmelstjerna, G., Valiere, S., Gislard, M., Lluch, J., Kuchly, C., Klopp, C.
10.1101/2023.07.19.549683 — Posted: 2023-07-19 — Discussion: 2025-01-22  Peer Community In
Chromosome-level reference genome assembly for the mountain hare (Lepus timidus)
Fekete, Z., Absolon, D. E., Michell, C., Wood, J. M. D., Goffart, S., Pohjoismaki, J. L. O.
10.1101/2024.06.10.598177 — Posted: 2024-06-10 — Discussion: 2025-01-14  Peer Community In
The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics
Mc Cartney, A. M., Formenti, G., Mouton, A., Ciofi, C., Waterhouse, R. M., Mazzoni, C. J., De Panis, D., Schlude Marins, L. S., Leitao, H. G., Diedericks, G., Kirangwa, J., Morselli, M., Salces, J., Escudero, N., Iannucci, A., Natali, C., Svardal, H., Fernandez, R., De Pooter, T., Joris, G., Strazisar, M., Wood, J., Herron, K. E., Seehausen, O., Watts, P. C., Shaw, F., Davey, R. P., Minotto, A., Fernandez Gonzalez, J. M., Bohne, A., Alegria, C., Alioto, T., Alves, P. C., Amorim, I. R., Aury, J.-M., Backstrom, N., Baldrian, P., Ballarin, L., Baltrunaite, L., Barta, E., BedHom, B., Belser, C., B
10.1101/2023.09.25.559365 — Posted: 2023-09-28 — Discussion: 2025-01-13  Peer Community In

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