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432 Reviews — GigaScience — All Subjects

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Tools and techniques for computational reproducibility
Stephen R Piccolo, Michael B Frampton
10.1101/022707 — Posted: 2015-07-17 — Discussion: 2022-01-03  GigaScience
An overview of the National COVID-19 Chest Imaging Database: data quality and cohort analysis
Cushnan, D., Bennett, O., Berka, R., Bertolli, O., Chopra, A., Dorgham, S., Favaro, A., Ganepola, T., Halling-Brown, M., Imreh, G., Jacob, J., Jefferson, E., Lemarchand, F., Schofield, D., Wyatt, J. C., NCCID Collaborative
10.1101/2021.03.02.21252444 — Posted: 2021-03-03 — Discussion: 2021-11-24  GigaScience
Beyond brain age: Empirically-derived proxy measures of mental health
Dadi, K., Varoquaux, G., Houenou, J., Bzdok, D., Thirion, B., Engemann, D. A.
10.1101/2020.08.25.266536 — Posted: 2020-08-25 — Discussion: 2021-10-29  GigaScience
Detection and characterization of low and high genome coverage regions using an efficient running median and a double threshold approach.
Desvillechabrol, D., Bouchier, C., Kennedy, S., Cokelaer, T.
10.1101/092478 — Posted: 2016-12-08 — Discussion: 2021-10-26  GigaScience
Open Humans: A platform for participant-centered research and personal data exploration
Greshake Tzovaras, B., Arvai, K., Dulaney, M., Estrada-Galinanes, V., Gunderson, B., Head, T., Lewis, D., Nov, O., Shaer, O., Bobe, J., Price Ball, M.
10.1101/469189 — Posted: 2018-11-14 — Discussion: 2021-09-13  GigaScience
Scalable Analysis of Multi-Modal Biomedical Data
Smith, J. M., Shi, Y., Benedikt, M., Nikolic, M.
10.1101/2020.12.14.422781 — Posted: 2020-12-15 — Discussion: 2021-09-12  GigaScience
Comparison of long read methods for sequencing and assembly of a plant genome
Murigneux, V., Rai, S. K., Furtado, A., Bruxner, T. J. C., Tian, W., Ye, Q., Wei, H., Yang, B., Harliwong, I., Anderson, E., Mao, Q., Drmanac, R., Wang, O., Peters, B., Xu, M., Wu, P., Topp, B., Coin, L. J. M., Henry, R. J.
10.1101/2020.03.16.992933 — Posted: 2020-03-18 — Discussion: 2021-08-29  GigaScience
An efficient and improved laboratory workflow and tetrapod database for larger scale eDNA studies
Axtner, J., Crampton-Platt, A., Hoerig, L. A., Xu, C. C. Y., Yu, D. W., Wilting, A.
10.1101/345082 — Posted: 2018-06-12 — Discussion: 2021-08-25  GigaScience
Biodiversity genomics of small metazoans: high quality de novo genomes from single specimens of field-collected and ethanol-preserved springtails
Schneider, C., Woehle, C., Greve, C., D'Haese, C. A., Wolf, M., Janke, A., Balint, M., Hüttel, B.
10.1101/2020.08.10.244541 — Posted: 2020-08-11 — Discussion: 2021-08-17  GigaScience
Mantis: flexible and consensus-driven genome annotation
Queiros, P., Delogu, F., Hickl, O., May, P., Wilmes, P.
10.1101/2020.11.02.360933 — Posted: 2020-11-03 — Discussion: 2021-08-17  GigaScience

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