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442 Reviews — GigaScience — All Subjects

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Quantitative monitoring of nucleotide sequence data from genetic resources in context of their citation in the scientific literature
Lange, M., Alako, B., Cochrane, G., Ghaffar, M., Mascher, M., Habekost, P.-K., Hillebrand, U., Scholz, U., Zunder, F., Freitag, J., Scholz, A. H.
10.1101/2021.05.10.443393 — Posted: 2021-05-10 — Discussion: 2022-01-03  GigaScience
NCBI BLAST+ integrated into Galaxy
Peter J. A. Cock, John M. Chilton, Björn Grüning, James E. Johnson, Nicola Soranzo
10.1101/014043 — Posted: 2015-01-21 — Discussion: 2022-01-03  GigaScience
ISA API: An open platform for interoperable life science experimental metadata
Johnson, D., Cochrane, K., Davey, R. P., Etuk, A., Gonzalez-Beltran, A., Haug, K., Izzo, M., Larralde, M., Lawson, T. N., Minotto, A., Moreno, P., Nainala, V. C., O'Donovan, C., Pireddu, L., Roger, P., Shaw, F., Steinbeck, C., Weber, R. J., Sansone, S.-A., Rocca-Serra, P.
10.1101/2020.11.13.382119 — Posted: 2020-11-16 — Discussion: 2022-01-03  GigaScience
RNA-Seq analysis and annotation of a draft blueberry genome assembly identifies candidate genes involved in fruit ripening, biosynthesis of bioactive compounds, and stage-specific alternative splicing
Vikas Gupta, April Dawn Estrada, Ivory Clabaugh Blakley, Rob Reid, Ketan Patel, Mason D. Meyer, Stig Uggerhoj Andersen, Allan F. Brown, Mary Ann Lila, Ann Loraine
10.1101/010116 — Posted: 2014-10-08 — Discussion: 2022-01-03  GigaScience
Myth-busting the provider-user relationship for digital sequence information
Scholz, A. H., Lange, M., Habekost, P., Oldham, P., Cancio, I., Cochrane, G., Freitag, J.
10.1101/2021.08.02.454535 — Posted: 2021-08-03 — Discussion: 2022-01-03  GigaScience
A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data
Judith Risse, Marian Thomson, Garry Blakely, Georgios Koutsovoulos, Mark Blaxter, Mick Watson
10.1101/024323 — Posted: 2015-08-11 — Discussion: 2022-01-03  GigaScience
Clusterflock: A Flocking Algorithm for Isolating Congruent Phylogenomic Datasets
Apurva Narechania, Richard H Baker, Rob DeSalle, Barun Mathema, Barry Kreiswirth, Sergios-Orestis Kolokotronis, Paul J Planet
10.1101/045773 — Posted: 2016-03-25 — Discussion: 2022-01-03  GigaScience
A reference bacterial genome dataset generated on the MinION™ portable single-molecule nanopore sequencer
Josh Quick, Aaron Quinlan, Nicholas Loman
10.1101/009613 — Posted: 2014-09-26 — Discussion: 2022-01-03  GigaScience
Analyzing climate variations on multiple timescales can guide Zika virus response measures
Angel G Munoz, Madeleine C Thomson, Lisa Goddard, Sylvain Aldighieri
10.1101/059808 — Posted: 2016-06-19 — Discussion: 2022-01-03  GigaScience
Tools and techniques for computational reproducibility
Stephen R Piccolo, Michael B Frampton
10.1101/022707 — Posted: 2015-07-17 — Discussion: 2022-01-03  GigaScience

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